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Annotate lineages with names (eg: Delta) #61

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Tracked by #59
priesgo opened this issue Dec 19, 2022 · 1 comment
Closed
4 tasks
Tracked by #59

Annotate lineages with names (eg: Delta) #61

priesgo opened this issue Dec 19, 2022 · 1 comment
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@priesgo
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priesgo commented Dec 19, 2022

I initially thought of having a new lineages table in the database, where the PK is the Pangolin lineage identifier (ie: B.1.1.7) and additionally we have metadata about like WHO designation (ie: Delta), flag of VOC, parent lineage, etc.

This is a good resource to fetch such data: https://github.com/cov-lineages/constellations
There may be others.

Subtasks:

  • Define data model for the lineage table
  • Research the best resource to fetch such information
  • Integrate this data in the CoVigator package (via git submodule if possible)
  • Load data in DB at DB startup
@priesgo priesgo added this to the Lineage tab milestone Dec 19, 2022
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priesgo commented Feb 7, 2023

Add maybe a radio button into the lineages tab to switch to WHO names (eg: alpha, delta) instead of pangolin ids

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