BUSCO (Benchmarking sets of Universal Single-Copy Orthologs) provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs. Note: to plot BUSCO summary results, use the companion command: generate_plot.py -wd [WORKING_DIRECTORY] [OTHER OPTIONS] The plotting script is installed as a standalone executable and can be invoked directly as above. DO NOT call it 'python3 scripts/generate_plot.py' (as the user manual at https://busco.ezlab.org/busco_userguide.html#plot suggests). This change is specific to the way this container is organized.
- 5.4.1
- 5.4.7
- busco
- generate_plot.py
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run busco on our clusters:
#!/bin/bash #SBATCH -p PartitionName # batch, gpu, preempt, mpi or your group's own partition #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 1 #SBATCH -c 4 #SBATCH --mem=8G #SBATCH --job-name=busco #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module purge module load busco/XXXX ### you can run *module avail busco* to check all available versions