Suggestion: Fix file structure to make more sense

[robbietuk]

Currently the file structure does not make too much sense. Everything is currently run from STIR-GATE-Connection/VoxelisedSimulation/ and the main scripts are there. The project "Home" directory contains ExampleScanners/, ExamplePhantoms/ and VoxelisedSimulation/.

I propose that the content of VoxelisedSimulation/ be moved into the main directory, which would continue to contain ExampleScanners/ and ExamplePhantoms/ .

Currently no rush for this. It would break a lot of backwards compatibility. Maybe aim for v2.0?

[KrisThielemans]

I don't know. I don't mind a clean project directory with very little in there...

Possibly the name VoxelisedSimulation doesn't quite cover it anymore.

I'd consider more moving remain scripts in images elsewhere. It's very nonintuitive that they are there.

I'd also consider moving https://github.com/UCL/STIR-GATE-Connection/blob/master/VoxelisedSimulation/Output/Templates/lm_to_projdata_template.par elsewhere, which would then happily allow you to get rid of Output (Obviously you'd have to create those directories then in the script, but at some point you want to allow the output to be in other places, so then you'd have to create them anyway)

I wouldn't worry about backwards compatibility just yet. You haven't release v1.0 yet anyway 😄 . About time that you do though.

[robbietuk]

I don't know. I don't mind a clean project directory with very little in there...
Possibly the name VoxelisedSimulation doesn't quite cover it anymore.

Prehaps you're right, the name of the directory bugs me... and the fact ExamplePhantoms/ and ExampleScanners/ are in there. I will move them.

The templates and additional scripts will also be moved so Output/ doesn't contain anything. See #37

[robbietuk]

This was partly addressed by #41

[robbietuk]

My above comment was incorrect. This is all addressed by #41 except for the renamed of VoxelisedSimulation/, which is fine for now. Closing.