CoveragePlot error with 'zoom_3UTR=TRUE '

[BettinaNa]

Hi,

Thanks for creating this great tool! I'm running into an error when using the zoom3UTR=TRUE argument in the CoveragePlot function, e.g:

PlotCoverage(genome_gr = gtf_gr,
geneSymbol = "CXCL8",
genome = "hg38",
pdf_output = FALSE,
bamfiles = c("Disease.CXCL8.bam", "Control.CXCL8.bam"),
zoom_3UTR=TRUE,
bamfile.tracknames=c("Disease", "Control"))

}

Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'to': error in evaluating the argument 'query' in selecting a method for function 'findOver
laps': In range 1: at least two out of 'start', 'end', and 'width', must
be supplied.

Do you know what could be causing this error? I am using R version 4.0.5 (2021-03-31), and Sierra_0.99.24.

Thanks

[davhum]

Hi BettinaNa,
Apologies for not replying to this issue. Were you able to resolve? I have just ran PlotCoverage for CXCL8 (hg38) and it worked OK for me. I wonder if this might relate to the gtf file used? Does the zoom work on other genes? Happy to debug if this is still an issue.