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Dear Dr. Wang,
I used the PennCNV in my PIG DATA and I have some doubts. My SNP chip has 50,915 SNPs (GGP_Porcine_HD_E) from illumina plataform. Could you help me, please?
I used genomic_wave.pl for create my adjusted list. So I used the command bellow:
On Wed, Apr 17, 2019 at 11:20 AM micpp ***@***.***> wrote:
Dear Dr. Wang,
I used the PennCNV in my PIG DATA and I have some doubts. My SNP chip has
50,915 SNPs (GGP_Porcine_HD_E) from illumina plataform. Could you help me,
please?
I used genomic_wave.pl for create my adjusted list. So I used the command
bellow:
./detect_cnv.pl -test -hmm lib/hhall.hmm -pfb hernia_escrotal.pfb
-confidence -minlength 1000 -log detect_cnv_com_minlength.log -list
lista_adj.txt -out allsample_adjusted_com_minlength.rawcnv
My doubts are:
Do not I need use the -gcmodel for adjustment the signal file in the
command above, right?
My hmm file is it correct? I used hhall.hmm file for cnv call.
Thank you so much!
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Dear Dr. Wang,
I used the PennCNV in my PIG DATA and I have some doubts. My SNP chip has 50,915 SNPs (GGP_Porcine_HD_E) from illumina plataform. Could you help me, please?
I used genomic_wave.pl for create my adjusted list. So I used the command bellow:
./detect_cnv.pl -test -hmm lib/hhall.hmm -pfb hernia_escrotal.pfb -confidence -minlength 1000 -log detect_cnv_com_minlength.log -list lista_adj.txt -out allsample_adjusted_com_minlength.rawcnv
My doubts are:
Do not I need use the -gcmodel for adjustment the signal file in the command above, right?
My hmm file is it correct? I used hhall.hmm file for cnv call.
Thank you so much!
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