v1.2.6

• fixed various bugs
• minor improvements for stability
• more verbose documentation

v1.2.5

• Stability improvement
• Documentation improvement

v1.2.4

2016-01-07 Yunfei Guo yunfeigu@usc.edu

• Default exome definition changed to RefSeq exon
• Citation added (SeqMule published on Scientific Reports!)
• Updated tutorials and FAQs
• Bug fixes

v.1.2.3 release

• bug fixes
• add options in pipeline and stats subprograms to specify java executable

v1.2.2

• Bug fixes

v1.2.1

• Added a public machine image (AMI) for running SeqMule on Amazon EC2, see RUNNING IN THE CLOUD in Tutorials.

v1.2.0

• SeqMule now supports somatic variant calling via SAMtools and VarScan2
• Support for Sun Grid Engine
• New job script format (no influence for end users)
• New online help interface
• Enhanced job scheduling and more concurrency

v1.1.4

fixed a bug in file name parsing.

v1.1.3

• Illumina TruSight Capture Kit BED files added
• Replace Picard duplicate removal with SAMtools rmdup for faster speed
• Improved runtime output
• Bug fixes for /bin/sh, GATK3.3.0

v1.1.2

This is a new stable release with enhanced functionalities and multiple pre-configured analytical pipelines.