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initial cookiecutter cut and modifications (#1)
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--- | ||
name: run tests | ||
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on: | ||
push: | ||
branches: [main] | ||
pull_request: | ||
branches: [main] | ||
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jobs: | ||
run_tests: | ||
runs-on: ubuntu-latest | ||
env: | ||
DAGGER_CACHE_FROM: type=gha,scope=gc-cloud-storage-bucket | ||
DAGGER_CACHE_TO: type=gha,mode=max,scope=gc-cloud-storage-bucket | ||
steps: | ||
- name: Checkout | ||
uses: actions/checkout@v4 | ||
- name: Dagger | ||
uses: dagger/dagger-for-github@v4 | ||
with: | ||
cmds: | | ||
project update | ||
do test |
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######################################### | ||
# Terraform gitignores | ||
# sourced from: https://github.com/github/gitignore/blob/main/Terraform.gitignore | ||
######################################### | ||
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# Local .terraform directories | ||
**/.terraform/* | ||
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# .tfstate files | ||
*.tfstate | ||
*.tfstate.* | ||
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# Crash log files | ||
crash.log | ||
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# Ignore any .tfvars files that are generated automatically for each Terraform run. Most | ||
# .tfvars files are managed as part of configuration and so should be included in | ||
# version control. | ||
# | ||
# example.tfvars | ||
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# Ignore override files as they are usually used to override resources locally and so | ||
# are not checked in | ||
override.tf | ||
override.tf.json | ||
*_override.tf | ||
*_override.tf.json | ||
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# Include override files you do wish to add to version control using negated pattern | ||
# | ||
# !example_override.tf | ||
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# Include tfplan files to ignore the plan output of command: terraform plan -out=tfplan | ||
# example: *tfplan* | ||
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######################################### | ||
# Python gitignores | ||
# sourced from: https://github.com/github/gitignore/blob/main/Python.gitignore | ||
######################################### | ||
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# Byte-compiled / optimized / DLL files | ||
__pycache__/ | ||
*.py[cod] | ||
*$py.class | ||
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# C extensions | ||
*.so | ||
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# Distribution / packaging | ||
.Python | ||
build/ | ||
develop-eggs/ | ||
dist/ | ||
downloads/ | ||
eggs/ | ||
.eggs/ | ||
lib/ | ||
lib64/ | ||
parts/ | ||
sdist/ | ||
var/ | ||
wheels/ | ||
share/python-wheels/ | ||
*.egg-info/ | ||
.installed.cfg | ||
*.egg | ||
MANIFEST | ||
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# PyInstaller | ||
# Usually these files are written by a python script from a template | ||
# before PyInstaller builds the exe, so as to inject date/other infos into it. | ||
*.manifest | ||
*.spec | ||
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# Installer logs | ||
pip-log.txt | ||
pip-delete-this-directory.txt | ||
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# Unit test / coverage reports | ||
htmlcov/ | ||
.tox/ | ||
.nox/ | ||
.coverage | ||
.coverage.* | ||
.cache | ||
nosetests.xml | ||
coverage.xml | ||
*.cover | ||
*.py,cover | ||
.hypothesis/ | ||
.pytest_cache/ | ||
cover/ | ||
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# Translations | ||
*.mo | ||
*.pot | ||
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# Django stuff: | ||
*.log | ||
local_settings.py | ||
db.sqlite3 | ||
db.sqlite3-journal | ||
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# Flask stuff: | ||
instance/ | ||
.webassets-cache | ||
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# Scrapy stuff: | ||
.scrapy | ||
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# Sphinx documentation | ||
docs/_build/ | ||
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# PyBuilder | ||
.pybuilder/ | ||
target/ | ||
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# Jupyter Notebook | ||
.ipynb_checkpoints | ||
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# IPython | ||
profile_default/ | ||
ipython_config.py | ||
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# pyenv | ||
# For a library or package, you might want to ignore these files since the code is | ||
# intended to run in multiple environments; otherwise, check them in: | ||
# .python-version | ||
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# pipenv | ||
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. | ||
# However, in case of collaboration, if having platform-specific dependencies or dependencies | ||
# having no cross-platform support, pipenv may install dependencies that don't work, or not | ||
# install all needed dependencies. | ||
#Pipfile.lock | ||
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# poetry | ||
# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. | ||
# This is especially recommended for binary packages to ensure reproducibility, and is more | ||
# commonly ignored for libraries. | ||
# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control | ||
#poetry.lock | ||
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# pdm | ||
# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. | ||
#pdm.lock | ||
# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it | ||
# in version control. | ||
# https://pdm.fming.dev/#use-with-ide | ||
.pdm.toml | ||
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm | ||
__pypackages__/ | ||
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# Celery stuff | ||
celerybeat-schedule | ||
celerybeat.pid | ||
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# SageMath parsed files | ||
*.sage.py | ||
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# Environments | ||
.env | ||
.venv | ||
env/ | ||
venv/ | ||
ENV/ | ||
env.bak/ | ||
venv.bak/ | ||
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# Spyder project settings | ||
.spyderproject | ||
.spyproject | ||
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# Rope project settings | ||
.ropeproject | ||
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# mkdocs documentation | ||
/site | ||
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# mypy | ||
.mypy_cache/ | ||
.dmypy.json | ||
dmypy.json | ||
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# Pyre type checker | ||
.pyre/ | ||
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# pytype static type analyzer | ||
.pytype/ | ||
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# Cython debug symbols | ||
cython_debug/ | ||
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# PyCharm | ||
# JetBrains specific template is maintained in a separate JetBrains.gitignore that can | ||
# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore | ||
# and can be added to the global gitignore or merged into this file. For a more nuclear | ||
# option (not recommended) you can uncomment the following to ignore the entire idea folder. | ||
#.idea/ | ||
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# dagger ignores | ||
cue.mod/pkg | ||
cue.mod/dagger.* | ||
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# data ignores | ||
*.json | ||
*.zip | ||
*.tar.gz | ||
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# terraform ignores | ||
hashicorp/ | ||
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# tf credential ignore | ||
utilities/data-provider/service-account.json |
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# See https://pre-commit.com for more information | ||
# See https://pre-commit.com/hooks.html for more hooks | ||
--- | ||
# misc checks | ||
repos: | ||
- repo: https://github.com/pre-commit/pre-commit-hooks | ||
rev: v4.6.0 | ||
hooks: | ||
- id: trailing-whitespace | ||
- id: end-of-file-fixer | ||
- id: check-yaml | ||
- id: check-added-large-files | ||
- id: check-toml | ||
- id: detect-private-key | ||
# checking yaml formatting | ||
- repo: https://github.com/adrienverge/yamllint | ||
rev: v1.35.1 | ||
hooks: | ||
- id: yamllint | ||
# checking spelling | ||
- repo: https://github.com/codespell-project/codespell | ||
rev: v2.2.6 | ||
hooks: | ||
- id: codespell | ||
exclude: > | ||
(?x)^( | ||
.*\.lock|.*\.csv | ||
)$ | ||
# checking markdown formatting | ||
- repo: https://github.com/executablebooks/mdformat | ||
rev: 0.7.17 | ||
hooks: | ||
- id: mdformat | ||
# ignore terraform autogenerated docs | ||
exclude: > | ||
(?x)^( | ||
terraform/.* | | ||
terraform/.*/.* | ||
)$ | ||
# linting for terraform | ||
- repo: https://github.com/antonbabenko/pre-commit-terraform | ||
rev: v1.88.4 | ||
hooks: | ||
- id: terraform_docs | ||
args: | ||
- --hook-config=--path-to-file=README.md | ||
- --hook-config=--add-to-existing-file=true | ||
- --hook-config=--create-file-if-not-exist=true | ||
- id: terraform_fmt | ||
- id: terraform_tflint | ||
- id: terraform_trivy |
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BSD 3-Clause License | ||
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Copyright (c) 2023, University of Colorado Department of Biomedical Informatics | ||
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Redistribution and use in source and binary forms, with or without | ||
modification, are permitted provided that the following conditions are met: | ||
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1. Redistributions of source code must retain the above copyright notice, this | ||
list of conditions and the following disclaimer. | ||
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2. Redistributions in binary form must reproduce the above copyright notice, | ||
this list of conditions and the following disclaimer in the documentation | ||
and/or other materials provided with the distribution. | ||
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3. Neither the name of the copyright holder nor the names of its | ||
contributors may be used to endorse or promote products derived from | ||
this software without specific prior written permission. | ||
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" | ||
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | ||
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE | ||
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE | ||
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL | ||
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR | ||
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER | ||
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, | ||
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE | ||
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
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