• Code for: Disentangling the Relative Strength of Niche Competition from Grazing-Induced Phytoplankton Mortality

    PostScript 2 Updated Feb 15, 2017
  • Code for: Lysis, Lysogeny, and Virus-Microbe Ratios

    Matlab Updated Jan 20, 2017
  • Scripts for generating bipartite networks using a conflicting attachment model. The networks generated can be visualized and analyzed for modularity and nestedness.

    Matlab 1 Updated Nov 14, 2016
  • Matlab 1 Updated Aug 31, 2016
  • Code for: Lysis, Lysogeny, and Virus-Microbe Ratios

    Matlab Updated Aug 15, 2016
  • A collection of Perl scripts to calculate gene-level similarity among annotated genomes as used in Kislyuk et al. BMC Genomics 12: 32 (2011). The scripts can be executed from the command line and the only dependencies are BioPerl and NCBI BLAST. Separately, we include a MATLAB script to calculate fluidity and its variance directly from matrices …

    Perl 1 1 Updated Aug 11, 2016
  • Model of lysis-lysogeny switch in phage lambda, as per Joh and Weitz, PLoS Comp Biol, 2011

    Matlab 1 Updated May 24, 2016
  • Code for: Lysis, Lysogeny, and Virus-Microbe Ratios

    Matlab Updated May 4, 2016
  • Matlab 1 Updated Apr 12, 2016
  • HTML 1 Updated Feb 24, 2016
  • This is the front end of the Weitz Group github user page

    CSS Updated Jan 21, 2016
  • Matlab Updated Nov 9, 2015
  • Matlab Updated Nov 9, 2015
  • Updated Nov 9, 2015
  • Matlab Updated Nov 9, 2015
  • Code for "Modeling Post-death Transmission of Ebola: Challenges for Inference and Opportunities for Control"

    Matlab 1 Updated Nov 9, 2015
  • The source code of the publication :Image-based high-throughput field phenotyping of crop roots"

    Python 5 Updated Nov 5, 2015
  • Source code to generate the examples from the paper "A practical introduction to skeletons for the plant sciences"

    Python 2 Updated Oct 20, 2015
  • Matlab software for Taylor et al (201?) "Stochasticity and the limits to confidence when estimating R0 of Ebola and other emerging infectious diseases"

    Matlab 1 Updated Oct 16, 2015
  • Matlab 1 Updated Oct 16, 2015
  • Scripts for the paper: "Multiple regimes of robust patters bettween network structure and biodiversity"

    Matlab 2 Updated Oct 2, 2015
  • a simple SIR model

    R Updated Sep 29, 2015
  • Code for "Fluctuation Domains in Adaptive Evolution", published in TPB

    C 1 Updated Jul 9, 2014
  • The implementation of the Fiber walk, which is a self avoiding random walk model including lateral expansion

    Python 1 Updated Jan 23, 2014