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[Issue] Error when constructing DIA matrix and running predictSV script #30

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Jasonfengjx opened this issue Aug 14, 2023 · 0 comments

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@Jasonfengjx
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Bug Description:
I encountered an error while running the predictSV script. The error message indicates an issue with constructing a DIA matrix and a subsequent error in the script execution. Here are the details of the error:
gradle

warn("Constructing a DIA matrix with 6209 diagonals "
/home/fjx/ENTER/envs/EagleC/lib/python3.8/site-packages/scipy/sparse/_coo.py:428:
SparseEfficiencyWarning: Constructing a DIA matrix with %d diagonals is inefficient
warn("Constructing a DIA matrix with %d diagonals "
root INFO @ 08/12/23 20:26:35: Locate 10kb SV coordinates on the 5kb matrix ...
Traceback (most recent call last):
File "/home/fjx/ENTER/envs/EagleC/bin/predictSV", line 176, in
run()
File "/home/fjx/ENTER/envs/EagleC/bin/predictSV", line 130, in run
subprocess.check_call(' '.join(command), shell=True)
TypeError: sequence item 18: expected str instance, NoneType found

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