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update docs
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kepbod committed Jul 25, 2019
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Expand Up @@ -14,7 +14,22 @@ Zhang Y\*, Zhang XO\*, Chen T, Xiang JF, Yin QF, Xing YH, Zhu S, Yang L# and Che

Dong R, Zhang XO, Zhang Y, Ma XK, Chen LL and Yang L. CircRNA-derived pseudogenes. *Cell Res*, 2016, 15:611-624. [[Paper](http://www.ncbi.nlm.nih.gov/pubmed/27021280)] [[Github](https://github.com/YangLab/CIRCpseudo)]

### CSI

Dong R\*, Ma XK\*, Chen LL# and Yang L#. Increased complexity of circRNA expression during species evolution. *RNA Biol*, 2017, 14:1064-1074
[[Paper](https://www.tandfonline.com/doi/full/10.1080/15476286.2016.1269999)] [[Github](https://github.com/YangLab/CSI)]

### CLEAR

Ma XK\*, Wang MR, Liu CX, Dong R, Carmichael GG, Chen LL and Yang L#. A CLEAR pipeline for direct comparison of circular and linear RNA expression. 2019, *bioRxiv*. doi: 10.1101/668657
[[Paper](https://www.biorxiv.org/content/10.1101/668657v2)] [[Github](https://github.com/YangLab/CLEAR)]

### CIRCpedia

[[Website](http://www.picb.ac.cn/rnomics/circpedia/)]

Zhang XO\*, Dong R\*, Zhang Y\*, Zhang JL, Luo Z, Zhang J, Chen LL#, Yang L#. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs. *Genome Res*, 2016, 26:1277-1287
[[Paper](http://genome.cshlp.org/content/26/9/1277.abstract)] [[Website](http://www.picb.ac.cn/rnomics/circpedia/)]
[[Paper](http://genome.cshlp.org/content/26/9/1277.abstract)]

Dong R\*, Ma XK\*, Li GW, Yang L#. CIRCpedia v2: An Updated Database for Comprehensive CircRNA Annotation and Expression Comparison. *Genomics Proteomics Bioinformatics*, 2018, doi:10.1016/j.gpb.2018.08.001
[[Paper](https://www.sciencedirect.com/science/article/pii/S1672022918302596)]

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