CRISPR-Cas9 distance correction solver

cassiopeia/solver/__init__.py

@@ -1,5 +1,6 @@
 """Top level for Tree Solver development."""
 
+from .distance_correction import CRISPRCas9DistanceCorrectionSolver
 from .HybridSolver import HybridSolver
 from .ILPSolver import ILPSolver
 from .MaxCutGreedySolver import MaxCutGreedySolver

cassiopeia/solver/distance_correction/__init__.py

@@ -0,0 +1,12 @@
+"""
+Subpackage for distance correction solvers.
+"""
+from ._crispr_cas9_distance_correction_solver import (
+    CRISPRCas9DistanceCorrectionSolver,
+    crispr_cas9_corrected_hamming_distance,
+    crispr_cas9_corrected_ternary_hamming_distance,
+    crispr_cas9_default_collision_probability_estimator,
+    crispr_cas9_hardcoded_collision_probability_estimator,
+    crispr_cas9_default_mutation_proportion_estimator,
+    crispr_cas9_hardcoded_mutation_proportion_estimator,
+)