deprotonate pdb structure

[EyalRozenberg1]

On Deprotonation process on the PDB file, I see that you choose to deprotonate the file according to 'atom_name' field rather than element_symbol field.

see here:

graphein/graphein/protein/graphs.py

Line 152 in 553fd26

df, by_column="atom_name", list_of_values=["H"], boolean=False

Is there a reason why not to deprotonate according to element_symbol?
Your approach lives some H atoms in the PDB file. I could not find any explanation why they are more important than those that were deprotonated.
Thanks

[a-r-j]

Thanks for the report, Eyal! Should be fixed in 1.5.1 :)