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NAMESPACE
133 lines (132 loc) · 3.9 KB
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(assignMFs)
export(assignmentParameters)
export(continueAssignment)
export(edges)
export(nodes)
exportClasses(Assignment)
exportClasses(AssignmentParameters)
exportMethods(assignedData)
exportMethods(assignmentData)
exportMethods(assignments)
exportMethods(plotAdductDist)
exportMethods(plotFeatureSolutions)
exportMethods(plotNetwork)
exportMethods(plotSpectrum)
exportMethods(show)
exportMethods(summariseAssignment)
importFrom(CHNOSZ,count.elements)
importFrom(cli,console_width)
importFrom(crayon,blue)
importFrom(crayon,green)
importFrom(crayon,red)
importFrom(crayon,yellow)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,rename)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,slice_sample)
importFrom(dplyr,summarise)
importFrom(dplyr,tbl_df)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylim)
importFrom(ggraph,create_layout)
importFrom(ggraph,facet_edges)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_label)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(ggraph,scale_edge_color_gradient)
importFrom(ggraph,theme_graph)
importFrom(ggrepel,geom_text_repel)
importFrom(ggthemes,ptol_pal)
importFrom(ggthemes,scale_fill_ptol)
importFrom(graphlayouts,layout_igraph_stress)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,edge.attributes)
importFrom(igraph,set_edge_attr)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,vertex.attributes)
importFrom(lubridate,seconds_to_period)
importFrom(magrittr,"%>%")
importFrom(magrittr,set_names)
importFrom(magrittr,set_rownames)
importFrom(metabolyseR,analysisData)
importFrom(metabolyseR,analysisParameters)
importFrom(metabolyseR,analysisResults)
importFrom(metabolyseR,dat)
importFrom(metabolyseR,keepFeatures)
importFrom(metabolyseR,metabolyse)
importFrom(metabolyseR,sinfo)
importFrom(methods,new)
importFrom(methods,show)
importFrom(mzAnnotation,adducts)
importFrom(mzAnnotation,calcM)
importFrom(mzAnnotation,calcMZ)
importFrom(mzAnnotation,generateMF)
importFrom(mzAnnotation,isotopes)
importFrom(mzAnnotation,ppmError)
importFrom(mzAnnotation,relationshipCalculator)
importFrom(mzAnnotation,transformMF)
importFrom(mzAnnotation,transformations)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,parApply)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(patchwork,plot_annotation)
importFrom(patchwork,wrap_plots)
importFrom(purrr,map)
importFrom(purrr,map_dbl)
importFrom(purrr,map_lgl)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stringr,str_c)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split_fixed)
importFrom(stringr,str_sub)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidygraph,activate)
importFrom(tidygraph,as_tbl_graph)
importFrom(tidygraph,bind_graphs)
importFrom(tidygraph,graph_size)
importFrom(tidygraph,group_components)
importFrom(tidygraph,morph)
importFrom(tidygraph,tbl_graph)
importFrom(tidygraph,to_components)
importFrom(tidygraph,unmorph)
importFrom(tidyr,gather)
importFrom(utils,capture.output)
importFrom(utils,packageVersion)