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augustus error #88
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some additional information. if I load glibc 2.14 before running Quast, the basic statistics processor doesn't even run. |
Hi, @olechnwin ! Sorry for the late reply. Could you please elaborate on
Basic statistics processor is a Python module and it should not be affected by As for the primary topic. BUSCO depends on Augustus software and normally we download Augustus binaries if a user asks to run BUSCO. It seems that Augustus was compiled using newer version of After that, try to simply rerun Quast with the same arguments as before. Let me know if you have any problems or my suggestion is not working! |
Hey there,
I only have two files within /busco_stats/ which are:
See that the error report points to a folder busco_stats/run_BAC001/ which it's not here because it didn't run. Well, I've found this thread and executed the comand as you suggested.
Rerun quast but the error continues.
I would be very gratefull if you could give any advice on that. |
Hello, Leo!
in the beginning of your log. If you still is not be able to find the problem/solution, please post the Augustus log here and reopen the issue! |
I actually got same error message:
I was wondering I need to download those *.faa.1 files in advance or not, and where should I download them from. Thank you! UPDATE: the problem is actually because of augustus binary need higher version of glibc to run. Outdated version: stdlibc++.so.6.19 Updated it to stdlibc++.so.6.26 by adding my anaconda lib folder to LD_LIBRARY_PATH: export LD_LIBRARY_PATH=/my/anaconda3/lib:$LD_LIBRARY_PATH The problem got solved. |
@liuxl18-hku Thanks! in my case I added this line in my bash script, because I used miniconda
|
Hi,
I installed Quast 5.0.2 using
pip install quast
.When I tried to run BUSCO, I got this error in augustus.log:
"/gpfs0/home/lab/opt/quast5_gm_env/lib/python3.6/site-packages/quast_libs/augustus3.2.3/bin/augustus: /lib64/libc.so.6: version 'GLIBC_2.14' not found (required by /gpfs0/home/lab/opt/quast5_gm_env/lib/python3.6/site-packages/quast_libs/augustus3.2.3/bin/augustus)"
How do I fix this error?
Thanks!
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