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Build failure on =SPAdes-3.15.5 #1238

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TheChymera opened this issue Jan 22, 2024 · 2 comments
Closed
1 task done

Build failure on =SPAdes-3.15.5 #1238

TheChymera opened this issue Jan 22, 2024 · 2 comments

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@TheChymera
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Description of bug

I'm trying to package your software for Gentoo Linux, but the he build fails with this log → https://ppb.chymera.eu/76ee8e

spades.log

I could sadly find neither spades.log nor params.txt in the build directories, here's me looking for them: https://ppb.chymera.eu/6a6f6f (build.log is the file I uploaded above, perhaps that contains the necessary information?)

I am trying to build the software by running ./spades_compile.sh as described in the README, should I do something else?

params.txt

see above

SPAdes version

3.15.5

Operating System

Gentoo Linux

Python Version

3.11.7

Method of SPAdes installation

build from source

No errors reported in spades.log

  • Yes
@asl
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asl commented Jan 22, 2024

Hello

You need to apply patches from #1157 to build with gcc 13. This will be a part of next SPAdes release

@TheChymera
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@asl thank you, that worked!

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