spades hang at (kmer_coverage_model.cpp : 295) ... iteration 8

[zorino]

Hi,

I am trying to assemble illumina paired-end reads and it always get stuck in the assembly with kmer length = 55 at

(kmer_coverage_model.cpp : 295) ... iteration 8

The assemblies for kmer 21 and kmer 33 always passed though.

Any ideas ?

Thanks

[asl]

It really should not as everything is deterministic there. Does the problem reproduce with --only-assembler? Or with some light quality trimming?

[zorino]

I finally skipped length 55 and all other lengths worked well... don't know what was causing this but won't investigate further.
Thank you.