Visualize multiple chromsomes at once?

[tania-k]

Hello CNVnator group,
Thank you for a wonderful program. Your instructions have been straightforward and easy to follow with some trial and error.
As I am visualizing the results I am curious if you can visualize more than one chromosome at a time?

I attempted this using the EOF option.
cnvnator -root Ex15.all.root -view 1000 << EOF

chr1:1-75500
chr2:75701-213800
EOF
But this gave a really wonky figure. I would like to visualize all of the genome/chromosomes if possible? Or at least 3 at a time, kind of in a sliding-window style.

Thank you for your time!
Tania

[abyzov]

Hi, unfortunately CNVnator does not have functionality to visualize multiple regions. But you can used CNVpytor (the successor of CNVnator) which does have such a functionality. https://github.com/abyzovlab/CNVpytor Alexej Abyzov, Ph.D. Senior Associate Consultant, Associate Professor of Biomedical Informatics, Department of Quantitative Health Sciences, Center for Individualized Medicine, Mayo Clinic ----------------------------- Mayo Clinic, 200 1st street SW, Harwick 3-12 Rochester, MN 55905 www.abyzovlab.org<http://www.abyzovlab.org> tel: +1-(507)-538-0978