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environment.yml
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environment.yml
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name: subpred4
channels:
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.2.9=hd590300_0
- anyio=3.7.1=pyhd8ed1ab_0
- argcomplete=3.1.1=pyhd8ed1ab_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h5764c6d_3
- aria2=1.36.0=h43d1f13_4
- asttokens=2.2.1=pyhd8ed1ab_0
- atk-1.0=2.38.0=hd4edc92_1
- attr=2.5.1=h166bdaf_1
- attrs=23.1.0=pyh71513ae_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0
- beautifulsoup4=4.12.2=pyha770c72_0
- binutils_impl_linux-64=2.40=hf600244_0
- bioconductor-annotationdbi=1.62.2=r43hdfd78af_0
- bioconductor-biobase=2.60.0=r43ha9d7317_0
- bioconductor-biocgenerics=0.46.0=r43hdfd78af_0
- bioconductor-biostrings=2.68.1=r43ha9d7317_0
- bioconductor-data-packages=20230718=hdfd78af_1
- bioconductor-genomeinfodb=1.36.1=r43hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.10=r43hdfd78af_0
- bioconductor-go.db=3.17.0=r43hdfd78af_0
- bioconductor-gosemsim=2.26.0=r43hf17093f_0
- bioconductor-iranges=2.34.1=r43ha9d7317_0
- bioconductor-keggrest=1.40.0=r43hdfd78af_0
- bioconductor-org.sc.sgd.db=3.17.0=r43hdfd78af_0
- bioconductor-s4vectors=0.38.1=r43ha9d7317_0
- bioconductor-xvector=0.40.0=r43ha9d7317_0
- bioconductor-zlibbioc=1.46.0=r43ha9d7317_0
- black=23.7.0=py310hff52083_1
- blast=2.14.0=pl5321h6f7f691_2
- bleach=6.0.0=pyhd8ed1ab_0
- boost=1.78.0=py310hc4a4660_4
- boost-cpp=1.78.0=h6582d0a_3
- brotli=1.0.9=h166bdaf_9
- brotli-bin=1.0.9=h166bdaf_9
- brotli-python=1.0.9=py310hd8f1fbe_9
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.16.0=hbbf8b49_1016
- cd-hit=4.8.1=h43eeafb_9
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.15.1=py310h255011f_3
- charset-normalizer=3.2.0=pyhd8ed1ab_0
- click=8.1.4=unix_pyh707e725_0
- comm=0.1.3=pyhd8ed1ab_0
- contourpy=1.1.0=py310hd41b1e2_0
- curl=8.1.2=h409715c_0
- cycler=0.11.0=pyhd8ed1ab_0
- cython=0.29.36=py310hc6cd4ac_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.6.7=py310heca2aa9_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrez-direct=16.2=he881be0_1
- entrypoints=0.4=pyhd8ed1ab_0
- et_xmlfile=1.1.0=pyhd8ed1ab_0
- exceptiongroup=1.1.2=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- fastcluster=1.2.6=py310h769672d_2
- flake8=6.0.0=pyhd8ed1ab_0
- flit-core=3.9.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.40.0=py310h2372a71_0
- freetype=2.12.1=hca18f0e_1
- freetype-py=2.3.0=pyhd8ed1ab_0
- fribidi=1.0.10=h36c2ea0_0
- gawk=5.1.0=h7f98852_0
- gcc_impl_linux-64=13.1.0=hc4be1a9_0
- gdk-pixbuf=2.42.10=h6b639ba_2
- gensim=4.3.1=py310h9b08913_1
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=13.1.0=hd511a9b_0
- giflib=5.2.1=h0b41bf4_3
- glib=2.76.4=hfc55251_0
- glib-tools=2.76.4=hfc55251_0
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=8.1.0=h28d9a01_0
- greenlet=2.0.2=py310hc6cd4ac_1
- gsl=2.7=he838d99_0
- gst-plugins-base=1.22.4=hf7dbed1_1
- gstreamer=1.22.4=h98fc4e7_1
- gtk2=2.24.33=h90689f9_2
- gts=0.7.6=h977cf35_4
- gxx_impl_linux-64=13.1.0=hc4be1a9_0
- h5py=3.9.0=nompi_py310hcca72df_101
- harfbuzz=7.3.0=hdb3a94d_0
- hdf5=1.14.1=nompi_h4f84152_100
- icu=72.1=hcb278e6_0
- idna=3.4=pyhd8ed1ab_0
- imbalanced-learn=0.11.0=pyhd8ed1ab_0
- importlib-metadata=6.8.0=pyha770c72_0
- importlib_metadata=6.8.0=hd8ed1ab_0
- importlib_resources=6.0.0=pyhd8ed1ab_1
- ipykernel=6.24.0=pyh71e2992_0
- ipython=8.14.0=pyh41d4057_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.0.7=pyhd8ed1ab_0
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.3.0=pyhd8ed1ab_1
- jq=1.5=0
- jsonschema=4.18.0=pyhd8ed1ab_0
- jsonschema-specifications=2023.6.1=pyhd8ed1ab_0
- jupyter=1.0.0=py310hff52083_8
- jupyter_client=8.3.0=pyhd8ed1ab_0
- jupyter_console=6.6.3=pyhd8ed1ab_0
- jupyter_core=5.3.1=py310hff52083_0
- jupyter_events=0.6.3=pyhd8ed1ab_0
- jupyter_server=2.7.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.8=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_16
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_1
- krb5=1.20.1=h81ceb04_0
- lame=3.100=h166bdaf_1003
- lcms2=2.15=haa2dc70_1
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libaec=1.0.6=hcb278e6_1
- libblas=3.9.0=17_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_9
- libbrotlidec=1.0.9=h166bdaf_9
- libbrotlienc=1.0.9=h166bdaf_9
- libcap=2.67=he9d0100_0
- libcblas=3.9.0=17_linux64_openblas
- libclang=15.0.7=default_h7634d5b_2
- libclang13=15.0.7=default_h9986a30_2
- libcups=2.3.3=h36d4200_3
- libcurl=8.1.2=h409715c_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.12=hf998b51_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=13.1.0=he3cc6c4_0
- libgcc-ng=13.1.0=he5830b7_0
- libgcrypt=1.10.1=h166bdaf_0
- libgd=2.3.3=hfa28ad5_6
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libglib=2.76.4=hebfc3b9_0
- libgomp=13.1.0=he5830b7_0
- libgpg-error=1.47=h71f35ed_0
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=17_linux64_openblas
- libllvm15=15.0.7=h5cf9203_2
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.23=pthreads_h80387f5_0
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=15.3=hbcd7760_1
- librsvg=2.56.1=h98fae49_0
- libsanitizer=13.1.0=hfd8a6a1_0
- libsndfile=1.2.0=hb75c966_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.42.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.1.0=he3cc6c4_0
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libsystemd0=253=h8c4010b_1
- libtiff=4.5.1=h8b53f26_0
- libtool=2.4.7=h27087fc_0
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp=1.3.1=hbf2b3c1_0
- libwebp-base=1.3.1=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxkbcommon=1.5.0=h5d7e998_3
- libxml2=2.11.4=h0d562d8_0
- libzlib=1.2.13=hd590300_5
- lz4-c=1.9.4=hcb278e6_0
- make=4.3=hd18ef5c_1
- markupsafe=2.1.3=py310h2372a71_0
- matplotlib=3.7.2=py310hff52083_0
- matplotlib-base=3.7.2=py310hf38f957_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mccabe=0.7.0=pyhd8ed1ab_0
- mistune=3.0.0=pyhd8ed1ab_0
- mmseqs2=14.7e284=pl5321h6a68c12_2
- mpg123=1.31.3=hcb278e6_0
- munkres=1.1.4=pyh9f0ad1d_0
- mypy_extensions=1.0.0=pyha770c72_0
- mysql-common=8.0.33=hf1915f5_1
- mysql-libs=8.0.33=hca2cd23_1
- nbclassic=1.0.0=pyhb4ecaf3_1
- nbclient=0.8.0=pyhd8ed1ab_0
- nbconvert=7.6.0=pyhd8ed1ab_0
- nbconvert-core=7.6.0=pyhd8ed1ab_0
- nbconvert-pandoc=7.6.0=pyhd8ed1ab_0
- nbformat=5.9.1=pyhd8ed1ab_0
- ncbi-vdb=3.0.0=pl5321h87f3376_0
- ncurses=6.4=hcb278e6_0
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- networkx=3.1=pyhd8ed1ab_0
- notebook=6.5.4=pyha770c72_0
- notebook-shim=0.2.3=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.89=he45b914_0
- numpy=1.25.1=py310ha4c1d20_0
- obonet=1.0.0=pyh7cba7a3_0
- openjpeg=2.5.0=hfec8fc6_2
- openpyxl=3.1.2=py310h2372a71_0
- openssl=3.1.3=hd590300_0
- overrides=7.3.1=pyhd8ed1ab_0
- owlready2=0.43=py310h2372a71_0
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.3=py310h7cbd5c2_1
- pandoc=3.1.3=h32600fe_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.50.14=heaa33ce_1
- parso=0.8.3=pyhd8ed1ab_0
- pathspec=0.11.1=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=3_hd590300_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321h166bdaf_0
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-encode=3.19=pl5321h166bdaf_0
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h4ac6f70_6
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-parent=0.241=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321h166bdaf_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-storable=3.15=pl5321h166bdaf_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pigz=2.6=h27826a3_0
- pillow=10.0.0=py310h582fbeb_0
- pip=23.1.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=3.8.1=pyhd8ed1ab_0
- ply=3.11=py_1
- pooch=1.7.0=pyha770c72_3
- prometheus_client=0.17.1=pyhd8ed1ab_0
- prompt-toolkit=3.0.39=pyha770c72_0
- prompt_toolkit=3.0.39=hd8ed1ab_0
- psutil=5.9.5=py310h1fa729e_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio-client=16.1=hb77b528_4
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycairo=1.24.0=py310hda9f760_0
- pycodestyle=2.10.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pyflakes=3.0.1=pyhd8ed1ab_0
- pygments=2.15.1=pyhd8ed1ab_0
- pygraphviz=1.11=py310h91ff30a_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py310hab646b1_3
- pyqt5-sip=12.11.0=py310heca2aa9_3
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.12=hd12c33a_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.17.1=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytz=2023.3=pyhd8ed1ab_0
- pyyaml=6.0=py310h5764c6d_5
- pyzmq=25.1.0=py310h5bbb5d0_0
- qt-main=5.15.8=hf9e2b05_14
- qtconsole=5.4.3=pyhd8ed1ab_0
- qtconsole-base=5.4.3=pyha770c72_0
- qtpy=2.3.1=pyhd8ed1ab_0
- r-askpass=1.1=r43h57805ef_4
- r-base=4.3.1=hfabd6f2_1
- r-bit=4.0.5=r43h57805ef_1
- r-bit64=4.0.5=r43h57805ef_2
- r-bitops=1.0_7=r43h57805ef_2
- r-blob=1.2.4=r43hc72bb7e_1
- r-cachem=1.0.8=r43h57805ef_1
- r-cli=3.6.1=r43ha503ecb_1
- r-codetools=0.2_19=r43hc72bb7e_1
- r-cpp11=0.4.6=r43hc72bb7e_0
- r-crayon=1.5.2=r43hc72bb7e_2
- r-curl=5.0.1=r43hf9611b0_0
- r-dbi=1.1.3=r43hc72bb7e_2
- r-digest=0.6.33=r43ha503ecb_0
- r-fastmap=1.1.1=r43ha503ecb_1
- r-future=1.33.0=r43hc72bb7e_0
- r-future.apply=1.11.0=r43hc72bb7e_1
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