Clarification on AbdomenMRUS-prostate-segmentation training directory please

[pgerbino]

Hi,

Looking at the AbdomenMRUS-prostate-segmentation/training directory in module whole_gland_seg_archive.py

I see reference on line 317 to ds-config-all.json:

# read subject list of cases without patient overlap with PI-CAI test/validation sets with open(project_root / "joeran/Data/ds-config/V2_ZonalSegmentation299/ds-config-all.json") as fp: subject_list = json.load(fp)['subject_list']

Is that something I need to create or is it generally available?

Also although I can download the prostate158 and prostatex datasets there is also reference to a RNMC dataset - lines 336. Is this publicly available?

Thanks in advance for any help.

[joeranbosma]

Dear @pgerbino,

The RNMC dataset is unfortunately not publicly available. The ds-config is a JSON dictionary with key ”subject_list” that contains a list of base filenames to use for training. You will have to make that file yourself based on what data you will use.

Hope this helps,
Joeran