DESCRIPTION

Package: ogrdbstats
Type: Package
Title: Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics
Version: 0.5.1
Authors@R: person(
  "William", "Lees",
  email = "william@lees.org.uk",
  role = c("aut", "cre"),
  comment = c(ORCID = "0000-0001-9834-6840"))
URL: https://github.com/airr-community/ogrdbstats
BugReports: https://github.com/airr-community/ogrdbstats/issues
Description: Multiple tools are now available for inferring the personalised 
    germ line set from an adaptive immune receptor repertoire. 
    Output from these tools is converted to 
    a single format and supplemented with rich data such as usage and 
    characterisation of 'novel' germ line alleles. This data can be 
    particularly useful when considering the validity of novel inferences. Use
    of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.
License: CC BY-SA 4.0
Encoding: UTF-8
Depends:
    R (>= 2.10)
biocViews:
Imports:
  dplyr (>= 0.8.3),
  ggplot2 (>= 3.2.1),
  magrittr,
  tigger (>= 0.4.0),
  alakazam (>= 0.3.0),
  stringr (>= 1.4.0),
  data.table,
  gridExtra (>= 2.3),
  tidyr (>= 1.0.0),
  stringdist (>= 0.9.5.2),
  RColorBrewer (>= 1.1-2),
  Biostrings (>= 2.52.0),
  argparser (>= 0.4),
  ComplexHeatmap,
  bookdown,
  scales,
Suggests:
  knitr,
  rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.2.3
LazyData: true