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Cannot read stream serialized with a newer version of Julia. Got data version 11 > current version 10 #425

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tlienart opened this issue Sep 9, 2020 · 6 comments
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Cannot read stream serialized with a newer version of Julia. Got data version 11 > current version 10 #425

tlienart opened this issue Sep 9, 2020 · 6 comments

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@tlienart
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tlienart commented Sep 9, 2020

On Julia 1.5.1 I don't seem to be able to install MLJBase anymore (stack trace below) (I was trying to update MLJLM)

] add MLJBase
using MLJBase

throws

[ Info: Precompiling MLJBase [a7f614a8-145f-11e9-1d2a-a57a1082229d]
ERROR: LoadError: LoadError: LoadError: LoadError: Cannot read stream serialized with a newer version of Julia.
Got data version 11 > current version 10
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] readheader(::Serialization.Serializer{IOStream}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:715
 [3] handle_deserialize(::Serialization.Serializer{IOStream}, ::Int32) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:878
 [4] deserialize(::Serialization.Serializer{IOStream}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:773
 [5] deserialize at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:760 [inlined]
 [6] open(::typeof(Serialization.deserialize), ::String, ::Vararg{String,N} where N; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at ./io.jl:325
 [7] open at ./io.jl:323 [inlined]
 [8] (::TimeZones.var"#3#4"{String})() at /Users/tlienart/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:50
 [9] get!(::TimeZones.var"#3#4"{String}, ::Dict{String,Tuple{Dates.TimeZone,TimeZones.Class}}, ::String) at ./dict.jl:450
 [10] Dates.TimeZone(::String, ::TimeZones.Class) at /Users/tlienart/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:46 (repeats 2 times)
 [11] @tz_str(::LineNumberNode, ::Module, ::Any) at /Users/tlienart/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:86
 [12] #macroexpand#36 at ./expr.jl:108 [inlined]
 [13] macroexpand at ./expr.jl:107 [inlined]
 [14] docm(::LineNumberNode, ::Module, ::Any, ::Any, ::Bool) at ./docs/Docs.jl:521 (repeats 2 times)
 [15] @doc(::LineNumberNode, ::Module, ::String, ::Vararg{Any,N} where N) at ./boot.jl:464
 [16] include(::Function, ::Module, ::String) at ./Base.jl:380
 [17] include at ./Base.jl:368 [inlined]
 [18] include(::String) at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/Memento.jl:1
 [19] top-level scope at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/Memento.jl:43
 [20] include(::Function, ::Module, ::String) at ./Base.jl:380
 [21] include(::Module, ::String) at ./Base.jl:368
 [22] top-level scope at none:2
 [23] eval at ./boot.jl:331 [inlined]
 [24] eval(::Expr) at ./client.jl:467
 [25] top-level scope at ./none:3
in expression starting at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/records.jl:157
in expression starting at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/records.jl:142
in expression starting at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/records.jl:142
in expression starting at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/Memento.jl:43
ERROR: LoadError: Failed to precompile Memento [f28f55f0-a522-5efc-85c2-fe41dfb9b2d9] to /Users/tlienart/.julia/compiled/v1.5/Memento/fk6ge_SE3G1.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
 [3] _require(::Base.PkgId) at ./loading.jl:1030
 [4] require(::Base.PkgId) at ./loading.jl:928
 [5] require(::Module, ::Symbol) at ./loading.jl:923
 [6] include(::Function, ::Module, ::String) at ./Base.jl:380
 [7] include(::Module, ::String) at ./Base.jl:368
 [8] top-level scope at none:2
 [9] eval at ./boot.jl:331 [inlined]
 [10] eval(::Expr) at ./client.jl:467
 [11] top-level scope at ./none:3
in expression starting at /Users/tlienart/.julia/packages/JLSO/wSVbM/src/JLSO.jl:41
ERROR: LoadError: Failed to precompile JLSO [9da8a3cd-07a3-59c0-a743-3fdc52c30d11] to /Users/tlienart/.julia/compiled/v1.5/JLSO/KVGL7_SE3G1.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
 [3] _require(::Base.PkgId) at ./loading.jl:1030
 [4] require(::Base.PkgId) at ./loading.jl:928
 [5] require(::Module, ::Symbol) at ./loading.jl:923
 [6] include(::Function, ::Module, ::String) at ./Base.jl:380
 [7] include(::Module, ::String) at ./Base.jl:368
 [8] top-level scope at none:2
 [9] eval at ./boot.jl:331 [inlined]
 [10] eval(::Expr) at ./client.jl:467
 [11] top-level scope at ./none:3
in expression starting at /Users/tlienart/.julia/packages/MLJBase/uKzAz/src/MLJBase.jl:32
ERROR: Failed to precompile MLJBase [a7f614a8-145f-11e9-1d2a-a57a1082229d] to /Users/tlienart/.julia/compiled/v1.5/MLJBase/jaWQl_SE3G1.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
 [3] _require(::Base.PkgId) at ./loading.jl:1030
 [4] require(::Base.PkgId) at ./loading.jl:928
 [5] require(::Module, ::Symbol) at ./loading.jl:923
@tlienart tlienart mentioned this issue Sep 9, 2020
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@tlienart
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tlienart commented Sep 9, 2020 •
edited
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Even in a fresh environment:

➜  Desktop mkdir testfoo
➜  Desktop cd testfoo
➜  testfoo julia15
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.5.1 (2020-08-25)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(@v1.5) pkg> activate .
 Activating new environment at `~/Desktop/testfoo/Project.toml`

(testfoo) pkg> add MLJBase
   Updating registry at `~/.julia/registries/General`
   Updating git-repo `https://github.com/JuliaRegistries/General.git`
  Resolving package versions...
Updating `~/Desktop/testfoo/Project.toml`
  [a7f614a8] + MLJBase v0.15.2
Updating `~/Desktop/testfoo/Manifest.toml`
  [fbb218c0] + BSON v0.2.6
  [324d7699] + CategoricalArrays v0.8.2
  [944b1d66] + CodecZlib v0.7.0
  [3da002f7] + ColorTypes v0.10.9
  [34da2185] + Compat v3.15.0
  [e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
  [ed09eef8] + ComputationalResources v0.3.2
  [a8cc5b0e] + Crayons v4.0.4
  [9a962f9c] + DataAPI v1.3.0
  [864edb3b] + DataStructures v0.18.4
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] + Distributions v0.23.11
  [e2ba6199] + ExprTools v0.1.2
  [8f5d6c58] + EzXML v1.1.0
  [48062228] + FilePathsBase v0.9.5
  [1a297f60] + FillArrays v0.9.6
  [53c48c17] + FixedPointNumbers v0.8.4
  [59287772] + Formatting v0.4.1
  [cd3eb016] + HTTP v0.8.17
  [83e8ac13] + IniFile v0.5.0
  [41ab1584] + InvertedIndices v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [9da8a3cd] + JLSO v2.3.3
  [682c06a0] + JSON v0.21.1
  [7f8f8fb0] + LearnBase v0.4.1
  [94ce4f54] + Libiconv_jll v1.16.0+6
  [30fc2ffe] + LossFunctions v0.6.2
  [a7f614a8] + MLJBase v0.15.2
  [e80e1ace] + MLJModelInterface v0.3.5
  [2e2323e0] + MLJScientificTypes v0.3.0
  [739be429] + MbedTLS v1.0.2
  [c8ffd9c3] + MbedTLS_jll v2.16.8+0
  [f28f55f0] + Memento v1.1.1
  [e1d29d7a] + Missings v0.4.4
  [78c3b35d] + Mocking v0.7.1
  [efe28fd5] + OpenSpecFun_jll v0.5.3+3
  [bac558e1] + OrderedCollections v1.3.0
  [90014a1f] + PDMats v0.10.0
  [d96e819e] + Parameters v0.12.1
  [69de0a69] + Parsers v1.0.10
  [08abe8d2] + PrettyTables v0.9.1
  [92933f4c] + ProgressMeter v1.3.2
  [1fd47b50] + QuadGK v2.4.1
  [3cdcf5f2] + RecipesBase v1.0.2
  [189a3867] + Reexport v0.2.0
  [79098fc4] + Rmath v0.6.1
  [f50d1b31] + Rmath_jll v0.2.2+1
  [321657f4] + ScientificTypes v1.0.0
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.10.3
  [2913bbd2] + StatsBase v0.33.1
  [4c63d2b9] + StatsFuns v0.9.5
  [856f2bd8] + StructTypes v1.1.0
  [cea106d9] + Syslogs v0.3.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v1.0.5
  [f269a46b] + TimeZones v1.3.2
  [3bb67fe8] + TranscodingStreams v0.9.5
  [3a884ed6] + UnPack v1.0.2
  [02c8fc9c] + XML2_jll v2.9.10+2
  [83775a58] + Zlib_jll v1.2.11+16
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8bb1440f] + DelimitedFiles
  [8ba89e20] + Distributed
  [9fa8497b] + Future
  [b77e0a4c] + InteractiveUtils
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [44cfe95a] + Pkg
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [4607b0f0] + SuiteSparse
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode

julia> using MLJBase
[ Info: Precompiling MLJBase [a7f614a8-145f-11e9-1d2a-a57a1082229d]
ERROR: LoadError: LoadError: LoadError: LoadError: Cannot read stream serialized with a newer version of Julia.
Got data version 11 > current version 10
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] readheader(::Serialization.Serializer{IOStream}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:715
 [3] handle_deserialize(::Serialization.Serializer{IOStream}, ::Int32) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:878
 [4] deserialize(::Serialization.Serializer{IOStream}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:773
 [5] deserialize at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Serialization/src/Serialization.jl:760 [inlined]
 [6] open(::typeof(Serialization.deserialize), ::String, ::Vararg{String,N} where N; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at ./io.jl:325
 [7] open at ./io.jl:323 [inlined]
 [8] (::TimeZones.var"#3#4"{String})() at /Users/tlienart/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:50
 [9] get!(::TimeZones.var"#3#4"{String}, ::Dict{String,Tuple{Dates.TimeZone,TimeZones.Class}}, ::String) at ./dict.jl:450
 [10] Dates.TimeZone(::String, ::TimeZones.Class) at /Users/tlienart/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:46 (repeats 2 times)
 [11] @tz_str(::LineNumberNode, ::Module, ::Any) at /Users/tlienart/.julia/packages/TimeZones/v0mfN/src/types/timezone.jl:86
 [12] #macroexpand#36 at ./expr.jl:108 [inlined]
 [13] macroexpand at ./expr.jl:107 [inlined]
 [14] docm(::LineNumberNode, ::Module, ::Any, ::Any, ::Bool) at ./docs/Docs.jl:521 (repeats 2 times)
 [15] @doc(::LineNumberNode, ::Module, ::String, ::Vararg{Any,N} where N) at ./boot.jl:464
 [16] include(::Function, ::Module, ::String) at ./Base.jl:380
 [17] include at ./Base.jl:368 [inlined]
 [18] include(::String) at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/Memento.jl:1
 [19] top-level scope at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/Memento.jl:43
 [20] include(::Function, ::Module, ::String) at ./Base.jl:380
 [21] include(::Module, ::String) at ./Base.jl:368
 [22] top-level scope at none:2
 [23] eval at ./boot.jl:331 [inlined]
 [24] eval(::Expr) at ./client.jl:467
 [25] top-level scope at ./none:3
in expression starting at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/records.jl:157
in expression starting at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/records.jl:142
in expression starting at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/records.jl:142
in expression starting at /Users/tlienart/.julia/packages/Memento/9bH5Y/src/Memento.jl:43
ERROR: LoadError: Failed to precompile Memento [f28f55f0-a522-5efc-85c2-fe41dfb9b2d9] to /Users/tlienart/.julia/compiled/v1.5/Memento/fk6ge_2k2X1.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
 [3] _require(::Base.PkgId) at ./loading.jl:1030
 [4] require(::Base.PkgId) at ./loading.jl:928
 [5] require(::Module, ::Symbol) at ./loading.jl:923
 [6] include(::Function, ::Module, ::String) at ./Base.jl:380
 [7] include(::Module, ::String) at ./Base.jl:368
 [8] top-level scope at none:2
 [9] eval at ./boot.jl:331 [inlined]
 [10] eval(::Expr) at ./client.jl:467
 [11] top-level scope at ./none:3
in expression starting at /Users/tlienart/.julia/packages/JLSO/wSVbM/src/JLSO.jl:41
ERROR: LoadError: Failed to precompile JLSO [9da8a3cd-07a3-59c0-a743-3fdc52c30d11] to /Users/tlienart/.julia/compiled/v1.5/JLSO/KVGL7_2k2X1.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
 [3] _require(::Base.PkgId) at ./loading.jl:1030
 [4] require(::Base.PkgId) at ./loading.jl:928
 [5] require(::Module, ::Symbol) at ./loading.jl:923
 [6] include(::Function, ::Module, ::String) at ./Base.jl:380
 [7] include(::Module, ::String) at ./Base.jl:368
 [8] top-level scope at none:2
 [9] eval at ./boot.jl:331 [inlined]
 [10] eval(::Expr) at ./client.jl:467
 [11] top-level scope at ./none:3
in expression starting at /Users/tlienart/.julia/packages/MLJBase/uKzAz/src/MLJBase.jl:32
ERROR: Failed to precompile MLJBase [a7f614a8-145f-11e9-1d2a-a57a1082229d] to /Users/tlienart/.julia/compiled/v1.5/MLJBase/jaWQl_2k2X1.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1305
 [3] _require(::Base.PkgId) at ./loading.jl:1030
 [4] require(::Base.PkgId) at ./loading.jl:928
 [5] require(::Module, ::Symbol) at ./loading.jl:923

@ablaom
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ablaom commented Sep 9, 2020

Mmm. Having trouble reproducing this. See JuliaAI/MLJLinearModels.jl#80 (comment)

@DilumAluthge
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Even in a fresh environment:

Try with a fresh depot:

julia> empty!(Base.DEPOT_PATH)

julia> pushfirst!(Base.DEPOT_PATH, mktempdir())

And then run the rest of the commands.

@OkonSamuel
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I still can't reproduce this even with a fresh depot

@ablaom
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ablaom commented Sep 10, 2020

@tlienart Can you install and run JLSO or Memento?

@tlienart
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No... I'll see on these repos whether there's a thread I can follow but in the meantime this issue here can probably be closed

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4 participants
@DilumAluthge @tlienart @ablaom @OkonSamuel