You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
When I run filterBlastInfo.sh with paired end option, I found the following error.
Although the error said "Paired end should be numbered as xxx/1 and xxx/2", the name of blast table file was like "XXX1.table" or "XXXX1_vs_bacteria.table". What should I do to address this error?
INFO: paired/single end flag -s not specified. PAIRED END assumed (default option).
INFO: organism type flag -V not specified. O(thers) assumed (default option).
PROCESSING DETAILS
INFO: processing PAIRED END data.
INFO: processing NON virus alignments
Processing file /media/.../decontaminer/RESULTS/BACTERIA/0_unmapped.1_vs_bacteria.table
Using L=read length G =0 M=0
Processing...
Format error on paired end names! Paired end should be numbered as xxx/1 and xxx/2 where xxx is the name of the query
--------------↑output--------------
Before filterBlastInfo.sh, I performed decontaMiner.sh using the paried end fastq files (0_unmapped.1.fastq, 0_unmapped.2.fastq). And in the directly RESULTS/BACTERIA, the files like 0_unmapped.1_vs_bacteria were generated.
The text was updated successfully, but these errors were encountered:
Hi,
When I run filterBlastInfo.sh with paired end option, I found the following error.
Although the error said "Paired end should be numbered as xxx/1 and xxx/2", the name of blast table file was like "XXX1.table" or "XXXX1_vs_bacteria.table". What should I do to address this error?
filterBlastInfo.sh -i /media/.../decontaminer/RESULTS/BACTERIA
--------------output--------------
-- FILTERING BLAST RESULTS --
INFO: paired/single end flag -s not specified. PAIRED END assumed (default option).
INFO: organism type flag -V not specified. O(thers) assumed (default option).
INFO: processing PAIRED END data.
INFO: processing NON virus alignments
Processing file /media/.../decontaminer/RESULTS/BACTERIA/0_unmapped.1_vs_bacteria.table
Using L=read length G =0 M=0
Processing...
Format error on paired end names! Paired end should be numbered as xxx/1 and xxx/2 where xxx is the name of the query
--------------↑output--------------
Before filterBlastInfo.sh, I performed decontaMiner.sh using the paried end fastq files (0_unmapped.1.fastq, 0_unmapped.2.fastq). And in the directly RESULTS/BACTERIA, the files like 0_unmapped.1_vs_bacteria were generated.
The text was updated successfully, but these errors were encountered: