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Releases: amnh/PhyG

Phylogenetic Graph (PhyG) v0.1.4

19 Oct 15:47
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Changes in v 0.1.4
-- Enhancements
Added missing Threshold to control levels of missing data in terminal taxa
Changes to parallel execution
Improved initial graph building for data sets with large amounts of missing data

--Bug fixed
Compile date in splash
Upper/lower case in wide and large sequence data

v.0.1.3

11 Aug 15:53
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Changes in v 0.1.3
-- Enhancements
Improved TNT output with TNT legible trees
Added graph evaluation procedures (Static Approximation, Single Traversal) to randomized search
Implemented Static Approximation for networks
Parallelized output of Implied Alignment fasta/c and TNT
Improved behavior of distance and character builds with missing data

-- Bugs Fixed
Transform for non 1:1 nucleotide sequences caused seg fault
Simulated annealing and drift parameter errors for networks

v0.1.2

06 Jul 15:32
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v0.1.2 Pre-release
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v0.1.2 Beta release

  1. Fixes issue with empty graph throwing an error in Text output
  2. Changed behavior of "search'
    a) if there are no exiting graphs, distance-based graphs are first created
    b) drift and annealing only operate on current best graphs
    PhyGraphUserManual.pdf
    Tutorials.tar.gz

Full Changelog: V0.1.2...v0.1.2

v0.1.1

05 Jul 17:56
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v0.1.1 Pre-release
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