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ggrd_grdtrack_util.c
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ggrd_grdtrack_util.c
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/*
subroutines for 3-D interpolation of scalar data in GMT grd
filesbased on GMT3.4.3 grdtrack
$Id: ggrd_grdtrack_util.c,v 1.6 2006/02/16 02:18:03 twb Exp twb $
original comments for grdtrack from GMT at bottom of file
*/
#include "gmt.h"
#include "gmt_bcr.h"
#include "ggrd_grdtrack_util.h"
#ifndef ONEEIGHTYOVERPI
#define ONEEIGHTYOVERPI 57.295779513082320876798154814105
#endif
#include <math.h>
#include <string.h>
#include <math.h>
void ggrd_init_master(struct ggrd_master *ggrd)
{
ggrd->mat_control = ggrd->mat_control_init = 0;
ggrd->ray_control = ggrd->ray_control_init = 0;
ggrd->vtop_control = ggrd->vtop_control_init = 0;
ggrd->age_control = ggrd->age_control_init = 0;
ggrd->nage = 0;ggrd->age_bandlim = 200.;
ggrd->sf_init = 0;
ggrd->time_hist.init = 0;
ggrd->temp.init = 0;ggrd->use_temp = 0;
ggrd->comp.init = 0;ggrd->use_comp = 0;
ggrd->time_hist.vstage_transition = 0.1; /* in Ma, transition */
/* 3-D velocity settings */
ggrd_init_vstruc(ggrd);
}
/*
wrapper
*/
/* for debugging, mostly */
void ggrd_grdinfo(char *filename)
{
struct ggrd_gt g[1];
char cdummy='c';
ggrd_grdtrack_init_general(FALSE,filename,&cdummy,
"",g,2,FALSE,FALSE);
fprintf(stderr,"ggrd_grdinfo: %s W: %g E: %g S: %g N: %g\n",
filename,g->grd->x_min,g->grd->x_max,g->grd->y_min,g->grd->y_max);
}
/*
init structure and files for the general case, this is a wrapper
for what's below
is_three: TRUE/FALSE for 3-D/2-D
grdfile: filename for 2-D and prefix for 3-D
depth_file: file with depth layers for 3-D
edge_info_string: as in GMT
g: ggrd_gt structure, pass allocated
use_nearneighbor: FALSE, will use bilinear interpolation TRUE: use nearneighbor
returns error code, 0 for regular execution
*/
int ggrd_grdtrack_init_general(ggrd_boolean is_three,
char *grdfile, char *depth_file,
char *gmt_edgeinfo_string,
struct ggrd_gt *g,
ggrd_boolean verbose,
ggrd_boolean change_z_sign,
ggrd_boolean use_nearneighbor)
{
/* this is a switch and can be left in */
//int pad[4]; /* GMT < 4.5.1 */
GMT_LONG pad[4]; /* GMT >= 4.5.1 */
int i,j;
float zavg,tmp;
#ifndef USE_GMT3
GMT_LONG interpolant;
if(use_nearneighbor)
interpolant = BCR_NEARNEIGHBOR; /* no interpolation */
else
interpolant = BCR_BILINEAR; /* bilinear is default for
interpolation */
#else /* GMT 3 */
ggrd_boolean interpolant = TRUE;
if(use_nearneighbor){
fprintf(stderr,"ggrd_grdtrack_init_general: nearneighbor not implemented for GMT3\n");
return 3;
}
#endif
/* clear all entries */
g->east = g->west = g->south = g->north = 0.0;
g->is_three = is_three;
g->init = FALSE;
if(ggrd_grdtrack_init(&g->west,&g->east,
&g->south,&g->north,&g->f,&g->mm,
grdfile,&g->grd,&g->edgeinfo,
gmt_edgeinfo_string,&g->geographic_in,
pad,is_three,depth_file,&g->z,&g->nz,
interpolant,verbose,change_z_sign,
g->loc_bcr))
return 2;
/*
check bandlimited maximum with positivity constraint
*/
g->fmaxlim = (float *)malloc(sizeof(float)*g->nz);
for(i=0;i < g->nz;i++){ /* loop through layers */
//g->fmaxlim[i] = g->grd[i].z_min;
g->fmaxlim[i] = 0.0;
for(j=0;j < g->mm;j++){ /* loop trough entries */
tmp = fabs(g->f[i*g->mm+j]);
//if((g->f[i*g->mm+j] < g->bandlim) &&(g->f[i*g->mm+j] > g->fmaxlim[i]))
if((tmp < g->bandlim) && tmp > g->fmaxlim[i])
g->fmaxlim[i] = tmp;
}
/* min: g->grd[i].z_min
max: g->grd[i].z_max,
bandlim_max: g->fmaxlim[i] */
//fprintf(stderr,"%g %g %g %g\n", g->grd[i].z_min,g->grd[i].z_max,g->bandlim,g->fmaxlim[i]);
}
if(is_three){
/*
check how the depth levels are specified for debugging
*/
zavg = 0.0;
for(i=0;i < g->nz;i++)
zavg += g->z[i];
if(zavg > 0)
g->zlevels_are_negative = FALSE;
else
g->zlevels_are_negative = TRUE;
}else{
g->zlevels_are_negative = FALSE;
}
// if(change_z_sign) /* reverse logic */
//g->zlevels_are_negative = (g->zlevels_are_negative)?(FALSE):(TRUE);
if(verbose){
fprintf(stderr,"ggrd_grdtrack_init_general: initialized from %s, %s, bcflag: %s.\n",
grdfile,(is_three)?("3-D"):("1-D"),
gmt_edgeinfo_string);
if(is_three){
fprintf(stderr,"ggrd_grdtrack_init_general: depth file %s, %i levels, %s.\n",
depth_file,g->nz,
(g->zlevels_are_negative)?("negative z levels"):("positive z levels"));
}
}
g->init = TRUE;
return 0;
}
/*
take log10, 10^x and/or scale complete grid. log10 and 10^x applies first
*/
int ggrd_grdtrack_rescale(struct ggrd_gt *g,
ggrd_boolean take_log10, /* take log10() */
ggrd_boolean take_power10, /* take 10^() */
ggrd_boolean rescale, /* rescale? */
double scale /* factor for rescaling */)
{
int i,j,k;
if(!g->init){
fprintf(stderr,"ggrd_grdtrack_rescale: error: ggrd not initialized\n");
return 1;
}
for(i=0;i < g->nz;i++){ /* loop through depths */
k = i*g->mm;
for(j=0;j < g->mm;j++,k++){
if(take_log10){
g->f[k] = log10(g->f[k]);
}
if(take_power10){
g->f[k] = pow(10.0,g->f[k]);
}
if(rescale)
g->f[k] *= scale;
}
}
return 0;
}
/*
for 3-D spherical
interpolation wrapper, uses r, theta, phi input. return value and TRUE if success,
undefined and FALSE else
*/
ggrd_boolean ggrd_grdtrack_interpolate_rtp(double r,double t,double p,
struct ggrd_gt *g,
double *value,
ggrd_boolean verbose,
ggrd_boolean shift_to_pos_lon)
{
double x[3];
ggrd_boolean result;
if(!g->init){ /* this will not necessarily work */
fprintf(stderr,"ggrd_grdtrack_interpolate_rtp: error, g structure not initialized\n");
return FALSE;
}
if(!g->is_three){
fprintf(stderr,"ggrd_grdtrack_interpolate_rtp: error, g structure is not 3-D\n");
return FALSE;
}
/*
convert coordinates to lon / lat / z
*/
x[0] = p * ONEEIGHTYOVERPI; /* lon */
if(shift_to_pos_lon){
/* make sure we are in 0 ... 360 system ? */
if(x[0]<0)
x[0]+=360.0;
if(x[0]>=360)
x[0]-=360.0;
}
x[1] = 90.0 - t * ONEEIGHTYOVERPI; /* lat */
x[2] = (1.0-r) * 6371.0; /* depth in [km] */
if(g->zlevels_are_negative) /* adjust for depth */
x[2] = -x[2];
result = ggrd_grdtrack_interpolate(x,TRUE,g->grd,g->f,
g->edgeinfo,g->mm,g->z,
g->nz,value,verbose,
g->loc_bcr);
return result;
}
/*
this is almost redundant, use lon lat in degrees and z in [km] depth
*/
ggrd_boolean ggrd_grdtrack_interpolate_lonlatz(double lon,double lat,double z,
struct ggrd_gt *g,
double *value,
ggrd_boolean verbose)
{
double x[3];
ggrd_boolean result;
if(!g->init){ /* this will not necessarily work */
fprintf(stderr,"ggrd_grdtrack_interpolate_rtp: error, g structure not initialized\n");
return FALSE;
}
if(!g->is_three){
fprintf(stderr,"ggrd_grdtrack_interpolate_rtp: error, g structure is not 3-D\n");
return FALSE;
}
/*
convert coordinates to lon / lat / z
*/
x[0] = lon;
x[1] = lat;
x[2] = z;
if(g->zlevels_are_negative) /* adjust for depth */
x[2] = -x[2];
result = ggrd_grdtrack_interpolate(x,TRUE,g->grd,g->f,
g->edgeinfo,g->mm,g->z,
g->nz,value,verbose,
g->loc_bcr);
return result;
}
/*
for 3-D cartesian
interpolation wrapper, uses x, y, z input. return value and TRUE if success,
undefined and FALSE else
this mean lon lat z
*/
ggrd_boolean ggrd_grdtrack_interpolate_xyz(double x,double y,
double z,
struct ggrd_gt *g,
double *value,
ggrd_boolean verbose)
{
double xloc[3];
ggrd_boolean result;
if(!g->init){ /* this will not necessarily work */
fprintf(stderr,"ggrd_grdtrack_interpolate_xyz: error, g structure not initialized\n");
return FALSE;
}
if(!g->is_three){
fprintf(stderr,"ggrd_grdtrack_interpolate_xyz: error, g structure is not 3-D\n");
return FALSE;
}
/*
convert coordinates
*/
xloc[0] = x; /* lon, x */
xloc[1] = y; /* lat, y */
xloc[2] = z; /* depth, z*/
if(g->zlevels_are_negative) /* adjust for depth */
xloc[2] = -xloc[2];
result = ggrd_grdtrack_interpolate(xloc,TRUE,g->grd,g->f,
g->edgeinfo,g->mm,g->z,
g->nz,value,verbose,
g->loc_bcr);
return result;
}
/*
for 2-D spherical
interpolation wrapper, uses theta, phi input.
return value and TRUE if success,
undefined and FALSE else
*/
ggrd_boolean ggrd_grdtrack_interpolate_tp(double t,double p,
struct ggrd_gt *g,
double *value,
ggrd_boolean verbose,
ggrd_boolean shift_to_pos_lon)
{
double x[3];
ggrd_boolean result;
if(!g->init){ /* this will not necessarily work */
fprintf(stderr,"ggrd_grdtrack_interpolate_tp: error, g structure not initialized\n");
return FALSE;
}
if(g->is_three){
fprintf(stderr,"ggrd_grdtrack_interpolate_tp: error, g structure is not 2-D\n");
return FALSE;
}
/*
convert coordinates
*/
x[0] = p * ONEEIGHTYOVERPI; /* lon */
if(shift_to_pos_lon){
if(x[0] < 0)
x[0] += 360.0;
if(x[0] >= 360.0)
x[0]-=360.0;
}
x[1] = 90.0 - t * ONEEIGHTYOVERPI; /* lat */
x[2] = 1.0;
result = ggrd_grdtrack_interpolate(x,FALSE,g->grd,g->f,
g->edgeinfo,g->mm,g->z,g->nz,
value,verbose,g->loc_bcr);
return result;
}
/*
for 2-D cartesian
interpolation wrapper, uses x,y input
return value and TRUE if success,
undefined and FALSE else
*/
ggrd_boolean ggrd_grdtrack_interpolate_xy(double xin,double yin,
struct ggrd_gt *g,
double *value,
ggrd_boolean verbose)
{
double x[3];
ggrd_boolean result;
if(!g->init){ /* this will not necessarily work */
fprintf(stderr,"ggrd_grdtrack_interpolate_xy: error, g structure not initialized\n");
return FALSE;
}
if(g->is_three){
fprintf(stderr,"ggrd_grdtrack_interpolate_xy: error, g structure is not 2-D\n");
return FALSE;
}
x[0] = xin;
x[1] = yin;
x[2] = 0.0;
result = ggrd_grdtrack_interpolate(x,FALSE,g->grd,g->f,g->edgeinfo,
g->mm,g->z,g->nz,value,verbose,
g->loc_bcr);
return result;
}
/*
free structure
*/
void ggrd_grdtrack_free_gstruc(struct ggrd_gt *g)
{
free(g->grd);
free(g->edgeinfo);
free(g->f);
if(g->is_three)
free(g->z);
}
/*
given a location vector in spherical theta, phi system (xp[3]) and a
Cartesian rotation vector wx, wy, wz (omega[3]), find the spherical
velocities vr, vtheta,vphi
*/
void ggrd_find_spherical_vel_from_rigid_cart_rot(double *vr,
double *vtheta,
double *vphi,
double *xp,
double *omega)
{
double vp[3],polar_base[3][3],ct,cp,st,sp,xc[3],tmp,vc[3];
int i;
/* cos and sin theta and phi */
ct=cos(xp[1]);cp=cos(xp[2]);
st=sin(xp[1]);sp=sin(xp[2]);
/* convert location to Cartesian */
tmp = st * xp[0];
xc[0]= tmp * cos(xp[2]); /* x */
xc[1]= tmp * sin(xp[2]); /* y */
xc[2]= ct * xp[0]; /* z */
/* v = omega \cross r */
vc[0] = omega[1]*xc[2] - omega[2]*xc[1];
vc[1] = omega[2]*xc[0] - omega[0]*xc[2];
vc[2] = omega[0]*xc[1] - omega[1]*xc[0];
/* get basis */
polar_base[0][0]= st * cp;polar_base[0][1]= st * sp;polar_base[0][2]= ct;
polar_base[1][0]= ct * cp;polar_base[1][1]= ct * sp;polar_base[1][2]= -st;
polar_base[2][0]= -sp;polar_base[2][1]= cp;polar_base[2][2]= 0.0;
/* convert */
for(i=0;i<3;i++){
vp[i] = polar_base[i][0] * vc[0];
vp[i] += polar_base[i][1] * vc[1];
vp[i] += polar_base[i][2] * vc[2];
}
vr[0] = vp[0];
vtheta[0] = vp[1];
vphi[0]=vp[2];
}
/*
initialize
*/
#ifndef USE_GMT3
int ggrd_grdtrack_init(double *west, double *east,double *south, double *north,
/* geographic bounds,
set all to zero to
get the whole range from the
input grid files
*/
float **f, /* data, pass as empty */
int *mm, /* size of data */
char *grdfile, /* name, or prefix, of grd file with scalars */
struct GRD_HEADER **grd, /* pass as empty */
struct GMT_EDGEINFO **edgeinfo, /* pass as empty */
char *edgeinfo_string, /* -fg/ -L type flags from GMT, can be empty */
ggrd_boolean *geographic_in, /* this is normally TRUE */
//int *pad, /* [4] array with padding (output) GMT<4.5.1*/
GMT_LONG *pad,
ggrd_boolean three_d, char *dfile, /* depth file name */
float **z, /* layers, pass as NULL */
int *nz, /* number of layers */
GMT_LONG interpolant, /* linear/cubic? */
ggrd_boolean verbose,
ggrd_boolean change_depth_sign, /* change the
sign of the
depth
levels to go from depth (>0) to z (<0) */
struct GMT_BCR *loc_bcr)
#else
int ggrd_grdtrack_init(double *west, double *east,
double *south, double *north,
float **f,int *mm,char *grdfile,
struct GRD_HEADER **grd,
struct GMT_EDGEINFO **edgeinfo,
char *edgeinfo_string,
ggrd_boolean *geographic_in,
int *pad,ggrd_boolean three_d,
char *dfile, float **z,int *nz,
ggrd_boolean interpolant,
ggrd_boolean verbose,
ggrd_boolean change_depth_sign,
struct BCR *loc_bcr)
#endif
{
FILE *din;
float dz1,dz2;
struct GRD_HEADER ogrd;
int i,one_or_zero,nx,ny,mx,my;
char filename[BUFSIZ*2],*cdummy;
static int gmt_init = FALSE;
/*
deal with edgeinfo
*/
*edgeinfo = (struct GMT_EDGEINFO *)
GMT_memory (VNULL, (size_t)1, sizeof(struct GMT_EDGEINFO), "ggrd_grdtrack_init");
/* init with nonsense to avoid compiler warning */
ogrd.x_min = ogrd.y_min =ogrd.x_max = ogrd.y_max = -100;
ogrd.x_inc = ogrd.y_inc = -1;
ogrd.node_offset = 0;ogrd.nx = ogrd.ny = -1;
#ifndef USE_GMT3
if(!gmt_init){
/* this should be OK as is. init only once globally */
GMT_program = "ggrd";
GMT_make_fnan (GMT_f_NaN);
GMT_make_dnan (GMT_d_NaN);
GMT_io_init ();/* Init the table i/o structure */
GMT_grdio_init();
if(strcmp(edgeinfo_string,"-fg")==0){
GMT_io.in_col_type[GMT_X] = GMT_io.out_col_type[GMT_X] = GMT_IS_LON;
GMT_io.in_col_type[GMT_Y] = GMT_io.out_col_type[GMT_Y] = GMT_IS_LAT;
}
if(strcmp(edgeinfo_string,"-fx")==0){
GMT_io.in_col_type[GMT_X] = GMT_io.out_col_type[GMT_X] = GMT_IS_LON;
}
if(strcmp(edgeinfo_string,"-fy")==0){
GMT_io.in_col_type[GMT_Y] = GMT_io.out_col_type[GMT_Y] = GMT_IS_LAT;
}
gmt_init = TRUE;
}
#endif
/*
init first edgeinfo (period/global?)
*/
GMT_boundcond_init (*edgeinfo);
/* check if geographic */
if (strlen(edgeinfo_string)>2){ /* the boundary flag was set */
/* parse */
GMT_boundcond_parse (*edgeinfo, (edgeinfo_string+2));
if ((*edgeinfo)->gn)
*geographic_in = 1;
else if((*edgeinfo)->nxp == -1)
*geographic_in = 2;
else
*geographic_in = 0;
}else{
*geographic_in = 0;
}
if(verbose >= 2)
if(*geographic_in)
fprintf(stderr,"ggrd_grdtrack_init: detected geographic region from geostring: %s\n",
edgeinfo_string);
*z = (float *) GMT_memory
(VNULL, (size_t)1, sizeof(float), "ggrd_grdtrack_init");
if(three_d){
/*
three D part first
*/
/*
init the layers
*/
din = fopen(dfile,"r");
if(!din){
fprintf(stderr,"ggrd_grdtrack_init: could not open depth file %s\n",
dfile);
return 1;
}
/* read in the layers */
*nz = 0;
dz1 = -1;
while(fscanf(din,"%f",(*z+ (*nz))) == 1){
if(change_depth_sign)
*(*z+ (*nz)) = -(*(*z+ (*nz)));
/* read in each depth layer */
*z = (float *) GMT_memory ((void *)(*z), (size_t)((*nz)+2), sizeof(float), "ggrd_grdtrack_init");
if(*nz > 0){ /* check for increasing layers */
if(dz1 < 0){
/* init first interval */
dz1 = *(*z+(*nz)) - *(*z+(*nz)-1);
dz2 = dz1;
}else{
/* later intervals */
dz2 = *(*z+(*nz)) - *(*z+(*nz)-1);
}
if(dz2 <= 0.0){ /* check for monotonic increase */
fprintf(stderr,"%s: error: levels in %s have to increase monotonically: n: %i dz; %g\n",
"ggrd_grdtrack_init",dfile,*nz,dz2);
return 2;
}
}
*nz += 1;
}
fclose(din);
/* end layer init"ggrd_grdtrack_initialization */
if(*nz < 2){
fprintf(stderr,"%s: error: need at least two layers in %s\n",
"ggrd_grdtrack_init", dfile);
return 3;
}
if(verbose)
fprintf(stderr,"%s: read %i levels from %s between zmin: %g and zmax: %g\n",
"ggrd_grdtrack_init",*nz,dfile,*(*z+0),*(*z+(*nz)-1));
}else{
*nz = 1;
*(*z) = 0.0;
if(verbose >= 2)
fprintf(stderr,"ggrd_grdtrack_init: single level at z: %g\n",*(*z));
}
/*
get nz grd and edgeinfo structures
*/
*grd = (struct GRD_HEADER *)
GMT_memory (NULL, (size_t)(*nz), sizeof(struct GRD_HEADER), "ggrd_grdtrack_init");
*edgeinfo = (struct GMT_EDGEINFO *)
GMT_memory (*edgeinfo, (size_t)(*nz), sizeof(struct GMT_EDGEINFO), "ggrd_grdtrack_init");
if(verbose >= 2)
fprintf(stderr,"ggrd_grdtrack_init: mem alloc ok\n");
#ifndef USE_GMT3
/* init the header */
GMT_grd_init (*grd,0,&cdummy,FALSE);
#endif
if(*nz == 1){
if(verbose >= 2)
#ifdef USE_GMT3 /* old */
fprintf(stderr,"ggrd_grdtrack_init: opening single file %s, GMT3 mode\n",grdfile);
if (GMT_cdf_read_grd_info (grdfile,(*grd))) {
fprintf (stderr, "%s: error opening file %s\n",
"ggrd_grdtrack_init", grdfile);
return 4;
}
#else /* >=4.1.2 */
if(verbose >= 2)
fprintf(stderr,"ggrd_grdtrack_init: opening single file %s, GMT4 mode\n",grdfile);
if(GMT_read_grd_info (grdfile,*grd)){
fprintf (stderr, "%s: error opening file %s for header\n",
"ggrd_grdtrack_init", grdfile);
return 4;
}
#endif
}else{
/* loop through headers for testing purposess */
for(i=0;i<(*nz);i++){
sprintf(filename,"%s.%i.grd",grdfile,i+1);
#ifdef USE_GMT3
if (GMT_cdf_read_grd_info (filename, (*grd+i))) {
fprintf (stderr, "%s: error opening file %s (-D option was used)\n",
"ggrd_grdtrack_init", filename);
return 6;
}
#else /* gmt 4 */
if (GMT_read_grd_info (filename,(*grd+i))) {
fprintf (stderr, "%s: error opening file %s (-D option was used)\n",
"ggrd_grdtrack_init", filename);
return 6;
}
#endif
if(i == 0){
/* save the first grid parameters */
ogrd.x_min = (*grd)[0].x_min;
ogrd.y_min = (*grd)[0].y_min;
ogrd.x_max = (*grd)[0].x_max;
ogrd.y_max = (*grd)[0].y_max;
ogrd.x_inc = (*grd)[0].x_inc;
ogrd.y_inc = (*grd)[0].y_inc;
ogrd.node_offset = (*grd)[0].node_offset;
ogrd.nx = (*grd)[0].nx;
ogrd.ny = (*grd)[0].ny;
/*
make sure we are in 0 ... 360 system
*/
if((ogrd.x_min < 0)||(ogrd.x_max<0)){
fprintf(stderr,"%s: WARNING: geographic grids should be in 0..360 lon system (found %g - %g)\n",
"ggrd_grdtrack_init",ogrd.x_min,ogrd.x_max);
}
}else{
/* test */
if((fabs(ogrd.x_min - (*grd)[i].x_min)>5e-7)||
(fabs(ogrd.y_min - (*grd)[i].y_min)>5e-7)||
(fabs(ogrd.x_max - (*grd)[i].x_max)>5e-7)||
(fabs(ogrd.y_max - (*grd)[i].y_max)>5e-7)||
(fabs(ogrd.x_inc - (*grd)[i].x_inc)>5e-7)||
(fabs(ogrd.y_inc - (*grd)[i].y_inc)>5e-7)||
(fabs(ogrd.nx - (*grd)[i].nx)>5e-7)||
(fabs(ogrd.ny - (*grd)[i].ny)>5e-7)||
(fabs(ogrd.node_offset - (*grd)[i].node_offset)>5e-7)){
fprintf(stderr,"%s: error: grid %i out of %i has different dimensions or setting from first\n",
"ggrd_grdtrack_init",i+1,(*nz));
return 8;
}
}
}
}
if(verbose > 2)
fprintf(stderr,"ggrd_grdtrack_init: read %i headers OK, grids appear to be same size\n",*nz);
if (fabs(*west - (*east)) < 5e-7) { /* No subset asked for , west same as east*/
*west = (*grd)[0].x_min;
*east = (*grd)[0].x_max;
*south = (*grd)[0].y_min;
*north = (*grd)[0].y_max;
}
one_or_zero = ((*grd)[0].node_offset) ? 0 : 1;
nx = irint ( (*east - *west) / (*grd)[0].x_inc) + one_or_zero;
ny = irint ( (*north - *south) / (*grd)[0].y_inc) + one_or_zero;
/* real size of data */
//nn = nx * ny;
/* padded */
mx = nx + 4;
my = ny + 4;
/*
get space for all layers
*/
*mm = mx * my;
*f = (float *) calloc((*mm) * (*nz) ,sizeof (float));
if(!(*f)){
fprintf(stderr,"ggrd_grdtrack_init: f memory error, mm: %i (%i by %i) by nz: %i \n",*mm,mx,my, *nz);
return 9;
}
if(verbose >= 2){
fprintf(stderr,"ggrd_grdtrack_init: mem alloc 2 ok, %g %g %g %g %i %i\n",
*west,*east,*south,*north,nx,ny);
}
/*
pad on sides
*/
pad[0] = pad[1] = pad[2] = pad[3] = 2;
for(i=0;i < (*nz);i++){
/*
loop through layers
*/
if(i != 0) /* copy first edgeinfo over */
memcpy((*edgeinfo+i),(*edgeinfo),sizeof(struct GMT_EDGEINFO));
if((*nz) == 1){
sprintf(filename,"%s",grdfile);
}else{ /* construct full filename */
sprintf(filename,"%s.%i.grd",grdfile,i+1);
}
if (verbose)
fprintf(stderr,"ggrd_grdtrack_init: reading grd file %s (%g - %g (%i) %g - %g (%i); geo: %i flag: %s\n",
filename,*west,*east,nx,*south,*north,ny,
*geographic_in,edgeinfo_string);
/*
read the grd files
*/
#ifndef USE_GMT3
/* GMT 4 */
if (GMT_read_grd (filename,(*grd+i), (*f+i* (*mm)),
*west, *east, *south, *north,
pad, FALSE)) {
fprintf (stderr, "%s: error reading file %s\n", "ggrd_grdtrack_init", grdfile);
return 10;
}
//fprintf(stderr,"%g %g %i %i %i %i\n",(*grd)->z_scale_factor,(*grd)->z_add_offset,nx,ny,mx,my);
#else
/* old GMT */
if (GMT_cdf_read_grd (filename, (*grd+i), (*f+i* (*mm)),
*west, *east, *south, *north,
pad, FALSE)) {
fprintf (stderr, "%s: error reading file %s\n", "ggrd_grdtrack_init", grdfile);
return 10;
}
#endif
/*
prepare the boundaries
*/
GMT_boundcond_param_prep ((*grd+i), (*edgeinfo+i));
if(i == 0){
/*
Initialize bcr structure, this can be the same for
all grids as long as they have the same dimensions
*/
#ifndef USE_GMT3
GMT_bcr_init ((*grd+i), pad, interpolant,1.0,loc_bcr);
#else
my_GMT_bcr_init ((*grd+i), pad, interpolant,loc_bcr);
#endif
}
/* Set boundary conditions */
GMT_boundcond_set ((*grd+i), (*edgeinfo+i), pad,
(*f+i*(*mm)));
} /* end layer loop */
if(verbose){
ggrd_print_layer_avg(*f,*z,mx,my,*nz,stderr,pad);
}
return 0;
}
void ggrd_print_layer_avg(float *x,float *z,int nx, int ny,
int m,FILE *out,
GMT_LONG *pad) /* >= 4.5.1 */
//int *pad)
{
int i,j,k,yl,xl,l,nxny,nxnyr;
float *tmp;
nxny = nx*ny; /* size with padding */
if(pad[0]+pad[1]+pad[2]+pad[3] == 0){
for(i=0;i < m;i++){
fprintf(stderr,"ggrd_grdtrack_init: layer %3i at depth %11g, mean: %11g rms: %11g\n",
i+1,z[i],ggrd_gt_mean((x+i*nxny),nxny),
ggrd_gt_rms((x+i*nxny),nxny));
}
}else{
nxnyr = (nx-pad[0]-pad[1]) * (ny-pad[2]-pad[3]); /* actual data */
tmp = (float *)malloc(sizeof(float)*nxnyr);
if(!tmp)GGRD_MEMERROR("ggrd_print_layer_avg");
xl = nx - pad[1];
yl = ny - pad[2];
for(i=0;i < m;i++){ /* loop through depths */
for(l=0,j=pad[3];j < yl;j++)
for(k=pad[0];k < xl;k++,l++)
tmp[l] = x[i*nxny + j * nx + k];
fprintf(stderr,"ggrd_grdtrack_init: layer %3i at depth %11g, mean: %11g rms: %11g\n",
i+1,z[i],ggrd_gt_mean(tmp,nxnyr),
ggrd_gt_rms(tmp,nxnyr));
}
free(tmp);
}
}
/*
interpolate value
*/
#ifndef USE_GMT3
ggrd_boolean ggrd_grdtrack_interpolate(double *in, /* lon/lat/z [2/3] in degrees/km */
ggrd_boolean three_d, /* use 3-D inetrpolation or 2-D? */
struct GRD_HEADER *grd, /* grd information */
float *f, /* data array */
struct GMT_EDGEINFO *edgeinfo, /* edge information */
int mm, /* nx * ny */
float *z, /* depth layers */
int nz, /* number of depth layers */
double *value, /* output value */
ggrd_boolean verbose,
struct GMT_BCR *loc_bcr)
#else
ggrd_boolean ggrd_grdtrack_interpolate(double *in, /* lon/lat/z [2/3] in degrees/km */
ggrd_boolean three_d, /* use 3-D inetrpolation or 2-D? */
struct GRD_HEADER *grd, /* grd information */
float *f, /* data array */
struct GMT_EDGEINFO *edgeinfo, /* edge information */
int mm, /* nx * ny */
float *z, /* depth layers */
int nz, /* number of depth layers */
double *value, /* output value */
ggrd_boolean verbose,
struct BCR *loc_bcr
)
#endif
{
int i1,i2;
double fac1,fac2,val1,val2;
static ggrd_boolean zwarned; /* this should move, leave for now */
/* If point is outside grd area,
shift it using periodicity or skip if not periodic. */
while ( (in[1] < grd[0].y_min) && (edgeinfo[0].nyp > 0) )
in[1] += (grd[0].y_inc * edgeinfo[0].nyp);
if (in[1] < grd[0].y_min){
return FALSE;
}
while ( (in[1] > grd[0].y_max) && (edgeinfo[0].nyp > 0) )
in[1] -= (grd[0].y_inc * edgeinfo[0].nyp);
if (in[1] > grd[0].y_max) {
return FALSE;
}
while ( (in[0] < grd[0].x_min) && (edgeinfo[0].nxp > 0) )
in[0] += (grd[0].x_inc * edgeinfo[0].nxp);
if (in[0] < grd[0].x_min) {
return FALSE;
}
while ( (in[0] > grd[0].x_max) && (edgeinfo[0].nxp > 0) )
in[0] -= (grd[0].x_inc * edgeinfo[0].nxp);
if (in[0] > grd[0].x_max) {
return FALSE;
}
/*
interpolate
*/
if(three_d){
ggrd_gt_interpolate_z(in[2],z,nz,&i1,&i2,&fac1,&fac2,verbose,&zwarned);
/*
we need these calls to reset the bcr.i and bcr.j counters
otherwise the interpolation routine would assume we have the same
grid
TO DO:
now, we still need the same grid dimensions, else a separate bcr
variable has to be introduced
*/
#ifndef USE_GMT3
val1 = GMT_get_bcr_z((grd+i1), in[0], in[1], (f+i1*mm), (edgeinfo+i1),loc_bcr);
val2 = GMT_get_bcr_z((grd+i2), in[0], in[1], (f+i2*mm), (edgeinfo+i2),loc_bcr);
#else
ggrd_global_bcr_assign(loc_bcr);
val1 = GMT_get_bcr_z((grd+i1), in[0], in[1], (f+i1*mm), (edgeinfo+i1));
ggrd_global_bcr_assign(loc_bcr);
val2 = GMT_get_bcr_z((grd+i2), in[0], in[1], (f+i2*mm), (edgeinfo+i2));
#endif
/* fprintf(stderr,"z(%3i/%3i): %11g z: %11g z(%3i/%3i): %11g f1: %11g f2: %11g v1: %11g v2: %11g rms: %11g %11g\n", */
/* i1+1,nz,z[i1],in[2],i2+1,nz,z[i2],fac1,fac2, */
/* val1,val2,rms((f+i1*mm),mm),rms((f+i2*mm),mm)); */
*value = fac1 * val1;
*value += fac2 * val2;
}else{
/* single layer */
#ifndef USE_GMT3
*value = GMT_get_bcr_z(grd, in[0], in[1], f, edgeinfo,loc_bcr);
#else
ggrd_global_bcr_assign(loc_bcr);
*value = GMT_get_bcr_z(grd, in[0], in[1], f, edgeinfo);
#endif
}
//if(verbose)
//fprintf(stderr,"ggrd_interpolate: lon: %g lat: %g val: %g\n",in[0],in[1],*value);
return TRUE;
}
/*
read in times for time history of velocities, if needed
if read_thistory is TRUE:
the input file for the tectonic stages is in format
t_start^1 t_stop^1
....
t_start^nvtimes t_stop^nvtimes
expecting ascending time intervals, which should have smaller time first and have no gaps
on return, the vtimes vector is in the format
t_left^1 t_mid^1 t_right^1
t_left^2 ...
...
t_left^nvtimes t_mid^nvtimes t_right^nvtimes
else, will only init for one step
returns error code
*/
int ggrd_init_thist_from_file(struct ggrd_t *thist,
char *input_file,
ggrd_boolean read_thistory,
ggrd_boolean verbose)
{
FILE *in;
double ta,tb;
ggrd_boolean opened_file = FALSE;
if(thist->init){
fprintf(stderr,"ggrd_read_time_intervals: error: already initialized\n");
return 1;
}
ggrd_vecalloc(&thist->vtimes,3,"rti: 1");
if(read_thistory){
in = fopen(input_file,"r");
if(!in){
if(verbose)
fprintf(stderr,"ggrd_read_time_intervals: WARNING: could not open file %s\n",
input_file);
opened_file = FALSE;
}else{
opened_file = TRUE;
}
}
if(opened_file){
thist->nvtimes = thist->nvtimes3 = 0;
while(fscanf(in,"%lf %lf",&ta,&tb) == 2){
thist->vtimes[thist->nvtimes3] = ta;
thist->vtimes[thist->nvtimes3+2] = tb;