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low contrast image warning #260

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DMrdjen opened this issue Oct 2, 2020 · 1 comment · Fixed by #292
Closed

low contrast image warning #260

DMrdjen opened this issue Oct 2, 2020 · 1 comment · Fixed by #292
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@omerbt
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enhancement New feature or request

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@DMrdjen
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DMrdjen commented Oct 2, 2020

Getting this warning message when loading images into notebook:

/usr/local/lib/python3.6/site-packages/ark/utils/data_utils.py:39: UserWarning: ../data/hippocampus/input_data/deepcell_input/Point102.tif is a low contrast image
io.imsave(save_path, out, plugin='tifffile')
@DMrdjen DMrdjen added the bug Something isn't working label Oct 2, 2020
@ngreenwald
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We can add a line to the data_loaders to suppress these warnings

@ngreenwald ngreenwald added enhancement New feature or request and removed bug Something isn't working labels Oct 2, 2020
@omerbt omerbt self-assigned this Oct 23, 2020
@omerbt omerbt mentioned this issue Oct 23, 2020
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ignore low_contrast warning angelolab/ark-analysis
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@ngreenwald @DMrdjen @omerbt