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HBASE-25523 Region normalizer chore thread is getting killed #2899

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merged 1 commit into from Jan 26, 2021

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mnpoonia
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@virajjasani virajjasani left a comment

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Edit: changes seem applicable to master and all active branch-2.x also. Let's raise PR in master and continue this discussion.

getRegionsLoad().get(hri.getRegionName());
ServerLoad load = masterServices.getServerManager().getLoad(sn);
if (load == null) {
LOG.debug(hri.getRegionNameAsString() + " was not found on any server");
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nit: was not found on any server while retrieving it's regionSize ?

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Saw this issue today.. few comments

Doesn't this mean the server "sn" is offline (not that region is not assigned)?

A tighter check here is isRegionOnline(), first check if the region is online (which ensures the region is not in transition and is assigned), we can even loop a few times to avoid any transient RITs.

Another related question is does it make sense to run normalizer if there are RITs.

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@bharathv you are right about RITs. Default behaviour of balancer is also to not execute when the cluster has RITs, only by providing a force option does it allow using balancer forcefully in the presence of RITs. Something similar (if not already in place) should be applicable to normalizer too.

Moreover, I just checked, this change should be applicable to master and branch-2's also. I think we can start with master branch PR, continue discussion, finalize changes there and then come back here while backporting.

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Doesn't this mean the server "sn" is offline (not that region is not assigned)?

True, most likely this would mean that region is in transition because RS hosting this region went offline.

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@virajjasani - Yes these changes will have to be done for branch-2 and master also.

A tighter check here is isRegionOnline(), first check if the region is online (which ensures the region is not in transition and is assigned), we can even loop a few times to avoid any transient RITs.

@bharathv - I am currently looking at the Merge procedure code will get back to you. But my understanding was if a region is in transition than merge will fail so we will catch that as an exception and move ahead to other regions. But i will look again and confirm this.

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Also in branch-2 and master we ahve https://github.com/apache/hbase/blob/master/hbase-server/src/main/java/org/apache/hadoop/hbase/master/assignment/MergeTableRegionsProcedure.java
where in constructor we cal checkRegionsToMerge which eventually calls checkOnline() where the condition is being checked.
@virajjasani @bharathv

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@mnpoonia Ya, nvm. I was hoping we'd add the same check here to avoid an unnecessary RPC to merge (when we know it will fail) but I think we are still prone to other race conditions (depending on when the master assignment state is updated), so perhaps better to keep the code simple as it is today and defer the check to when the merge is actually run.

True, most likely this would mean that region is in transition because RS hosting this region went offline.

@virajjasani I see what you mean but theoretically it could also be possible that this region is online elsewhere in which case the log is misleading, may be slightly reword to clarify it? (sorry for the nitpick)..

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@virajjasani I see what you mean but theoretically it could also be possible that this region is online elsewhere in which case the log is misleading

Hmm, I was thinking just the line above this where we get ServerName from AM, retrieves us regions hosting server, so was wondering in order for region to quickly transition and become online by the time we reach here might not be possible?

    ServerName sn = masterServices.getAssignmentManager().getRegionStates().
      getRegionServerOfRegion(hri);

One thing to figure out is what does this call return in case region is already in transition when we call this.

Anyways, good to reword accordingly in the log. Agree on it @bharathv .

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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 7m 58s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
-0 ⚠️ test4tests 0m 0s The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch.
_ branch-1 Compile Tests _
+1 💚 mvninstall 10m 36s branch-1 passed
+1 💚 compile 0m 52s branch-1 passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 compile 1m 4s branch-1 passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 checkstyle 2m 36s branch-1 passed
+1 💚 shadedjars 4m 24s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 55s branch-1 passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javadoc 0m 53s branch-1 passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+0 🆗 spotbugs 3m 55s Used deprecated FindBugs config; considering switching to SpotBugs.
+1 💚 findbugs 3m 51s branch-1 passed
_ Patch Compile Tests _
+1 💚 mvninstall 2m 38s the patch passed
+1 💚 compile 0m 50s the patch passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javac 0m 50s the patch passed
+1 💚 compile 0m 56s the patch passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 javac 0m 56s the patch passed
+1 💚 checkstyle 1m 51s the patch passed
+1 💚 whitespace 0m 1s The patch has no whitespace issues.
+1 💚 shadedjars 4m 10s patch has no errors when building our shaded downstream artifacts.
+1 💚 hadoopcheck 5m 3s Patch does not cause any errors with Hadoop 2.8.5 2.9.2.
+1 💚 javadoc 0m 30s the patch passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javadoc 0m 41s the patch passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 findbugs 2m 55s the patch passed
_ Other Tests _
-1 ❌ unit 115m 2s hbase-server in the patch failed.
+1 💚 asflicense 0m 35s The patch does not generate ASF License warnings.
172m 20s
Reason Tests
Timed out junit tests org.apache.hadoop.hbase.fs.TestBlockReorderMultiBlocks
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/1/artifact/out/Dockerfile
GITHUB PR #2899
Optional Tests dupname asflicense javac javadoc unit spotbugs findbugs shadedjars hadoopcheck hbaseanti checkstyle compile
uname Linux c42839ace2df 4.15.0-112-generic #113-Ubuntu SMP Thu Jul 9 23:41:39 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
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Personality /home/jenkins/jenkins-agent/workspace/Base-PreCommit-GitHub-PR_PR-2899/out/precommit/personality/provided.sh
git revision branch-1 / a819012
Default Java Azul Systems, Inc.-1.7.0_272-b10
Multi-JDK versions /usr/lib/jvm/zulu-8-amd64:Azul Systems, Inc.-1.8.0_262-b19 /usr/lib/jvm/zulu-7-amd64:Azul Systems, Inc.-1.7.0_272-b10
unit https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/1/artifact/out/patch-unit-hbase-server.txt
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Max. process+thread count 3584 (vs. ulimit of 10000)
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Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/1/console
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getRegionsLoad().get(hri.getRegionName());
ServerLoad load = masterServices.getServerManager().getLoad(sn);
if (load == null) {
LOG.debug(hri.getRegionNameAsString() + " was not found on any server");
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Saw this issue today.. few comments

Doesn't this mean the server "sn" is offline (not that region is not assigned)?

A tighter check here is isRegionOnline(), first check if the region is online (which ensures the region is not in transition and is assigned), we can even loop a few times to avoid any transient RITs.

Another related question is does it make sense to run normalizer if there are RITs.

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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 12m 36s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
-0 ⚠️ test4tests 0m 0s The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch.
_ branch-1 Compile Tests _
+1 💚 mvninstall 9m 49s branch-1 passed
+1 💚 compile 0m 46s branch-1 passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 compile 0m 49s branch-1 passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 checkstyle 1m 55s branch-1 passed
+1 💚 shadedjars 3m 25s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 48s branch-1 passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javadoc 0m 42s branch-1 passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+0 🆗 spotbugs 3m 16s Used deprecated FindBugs config; considering switching to SpotBugs.
+1 💚 findbugs 3m 12s branch-1 passed
_ Patch Compile Tests _
+1 💚 mvninstall 2m 11s the patch passed
+1 💚 compile 0m 47s the patch passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javac 0m 47s the patch passed
+1 💚 compile 0m 51s the patch passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 javac 0m 51s the patch passed
+1 💚 checkstyle 1m 45s the patch passed
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 shadedjars 3m 11s patch has no errors when building our shaded downstream artifacts.
+1 💚 hadoopcheck 5m 5s Patch does not cause any errors with Hadoop 2.8.5 2.9.2.
+1 💚 javadoc 0m 40s the patch passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javadoc 0m 48s the patch passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 findbugs 3m 19s the patch passed
_ Other Tests _
-1 ❌ unit 153m 21s hbase-server in the patch failed.
+1 💚 asflicense 0m 49s The patch does not generate ASF License warnings.
211m 24s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/2/artifact/out/Dockerfile
GITHUB PR #2899
Optional Tests dupname asflicense javac javadoc unit spotbugs findbugs shadedjars hadoopcheck hbaseanti checkstyle compile
uname Linux 514063f2dd62 4.15.0-126-generic #129-Ubuntu SMP Mon Nov 23 18:53:38 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality /home/jenkins/jenkins-home/workspace/Base-PreCommit-GitHub-PR_PR-2899/out/precommit/personality/provided.sh
git revision branch-1 / a819012
Default Java Azul Systems, Inc.-1.7.0_272-b10
Multi-JDK versions /usr/lib/jvm/zulu-8-amd64:Azul Systems, Inc.-1.8.0_262-b19 /usr/lib/jvm/zulu-7-amd64:Azul Systems, Inc.-1.7.0_272-b10
unit https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/2/artifact/out/patch-unit-hbase-server.txt
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Max. process+thread count 3510 (vs. ulimit of 10000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/2/console
versions git=1.9.1 maven=3.0.5 findbugs=3.0.1
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@mnpoonia
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mnpoonia commented Jan 25, 2021

@bharathv @virajjasani Have a look in your free cycle. Have reworded log line and added extra null check which is a possibility.

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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 8m 0s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
-0 ⚠️ test4tests 0m 0s The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch.
_ branch-1 Compile Tests _
+1 💚 mvninstall 10m 17s branch-1 passed
+1 💚 compile 0m 53s branch-1 passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 compile 0m 54s branch-1 passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 checkstyle 2m 1s branch-1 passed
+1 💚 shadedjars 3m 45s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 54s branch-1 passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javadoc 0m 47s branch-1 passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+0 🆗 spotbugs 3m 35s Used deprecated FindBugs config; considering switching to SpotBugs.
+1 💚 findbugs 3m 32s branch-1 passed
_ Patch Compile Tests _
+1 💚 mvninstall 2m 26s the patch passed
+1 💚 compile 0m 50s the patch passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javac 0m 50s the patch passed
+1 💚 compile 0m 57s the patch passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 javac 0m 57s the patch passed
+1 💚 checkstyle 1m 49s the patch passed
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 shadedjars 3m 31s patch has no errors when building our shaded downstream artifacts.
+1 💚 hadoopcheck 5m 45s Patch does not cause any errors with Hadoop 2.8.5 2.9.2.
+1 💚 javadoc 0m 38s the patch passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javadoc 0m 47s the patch passed with JDK Azul Systems, Inc.-1.7.0_272-b10
-1 ❌ findbugs 3m 39s hbase-server generated 2 new + 0 unchanged - 0 fixed = 2 total (was 0)
_ Other Tests _
-1 ❌ unit 118m 13s hbase-server in the patch failed.
+1 💚 asflicense 0m 35s The patch does not generate ASF License warnings.
174m 20s
Reason Tests
FindBugs module:hbase-server
Null pointer dereference of sn in org.apache.hadoop.hbase.master.normalizer.SimpleRegionNormalizer.getRegionSize(HRegionInfo) Dereferenced at SimpleRegionNormalizer.java:in org.apache.hadoop.hbase.master.normalizer.SimpleRegionNormalizer.getRegionSize(HRegionInfo) Dereferenced at SimpleRegionNormalizer.java:[line 227]
Load of known null value in org.apache.hadoop.hbase.master.normalizer.SimpleRegionNormalizer.getRegionSize(HRegionInfo) At SimpleRegionNormalizer.java:in org.apache.hadoop.hbase.master.normalizer.SimpleRegionNormalizer.getRegionSize(HRegionInfo) At SimpleRegionNormalizer.java:[line 227]
Failed junit tests hadoop.hbase.mapreduce.TestSecureLoadIncrementalHFiles
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/3/artifact/out/Dockerfile
GITHUB PR #2899
Optional Tests dupname asflicense javac javadoc unit spotbugs findbugs shadedjars hadoopcheck hbaseanti checkstyle compile
uname Linux 28215238bd1c 4.15.0-58-generic #64-Ubuntu SMP Tue Aug 6 11:12:41 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality /home/jenkins/jenkins-home/workspace/Base-PreCommit-GitHub-PR_PR-2899/out/precommit/personality/provided.sh
git revision branch-1 / a819012
Default Java Azul Systems, Inc.-1.7.0_272-b10
Multi-JDK versions /usr/lib/jvm/zulu-8-amd64:Azul Systems, Inc.-1.8.0_262-b19 /usr/lib/jvm/zulu-7-amd64:Azul Systems, Inc.-1.7.0_272-b10
findbugs https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/3/artifact/out/new-findbugs-hbase-server.html
unit https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/3/artifact/out/patch-unit-hbase-server.txt
Test Results https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/3/testReport/
Max. process+thread count 4183 (vs. ulimit of 10000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/3/console
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🎊 +1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 0m 41s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
-0 ⚠️ test4tests 0m 0s The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch.
_ branch-1 Compile Tests _
+1 💚 mvninstall 9m 47s branch-1 passed
+1 💚 compile 0m 38s branch-1 passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 compile 0m 45s branch-1 passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 checkstyle 1m 41s branch-1 passed
+1 💚 shadedjars 3m 2s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 48s branch-1 passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javadoc 0m 41s branch-1 passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+0 🆗 spotbugs 3m 5s Used deprecated FindBugs config; considering switching to SpotBugs.
+1 💚 findbugs 3m 2s branch-1 passed
_ Patch Compile Tests _
+1 💚 mvninstall 1m 57s the patch passed
+1 💚 compile 0m 42s the patch passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javac 0m 42s the patch passed
+1 💚 compile 0m 44s the patch passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 javac 0m 44s the patch passed
+1 💚 checkstyle 1m 31s the patch passed
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 shadedjars 2m 50s patch has no errors when building our shaded downstream artifacts.
+1 💚 hadoopcheck 4m 36s Patch does not cause any errors with Hadoop 2.8.5 2.9.2.
+1 💚 javadoc 0m 31s the patch passed with JDK Azul Systems, Inc.-1.8.0_262-b19
+1 💚 javadoc 0m 42s the patch passed with JDK Azul Systems, Inc.-1.7.0_272-b10
+1 💚 findbugs 2m 53s the patch passed
_ Other Tests _
+1 💚 unit 110m 16s hbase-server in the patch passed.
+1 💚 asflicense 0m 35s The patch does not generate ASF License warnings.
152m 13s
Subsystem Report/Notes
Docker ClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/4/artifact/out/Dockerfile
GITHUB PR #2899
Optional Tests dupname asflicense javac javadoc unit spotbugs findbugs shadedjars hadoopcheck hbaseanti checkstyle compile
uname Linux a8bce756201e 4.15.0-58-generic #64-Ubuntu SMP Tue Aug 6 11:12:41 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality /home/jenkins/jenkins-home/workspace/Base-PreCommit-GitHub-PR_PR-2899/out/precommit/personality/provided.sh
git revision branch-1 / a819012
Default Java Azul Systems, Inc.-1.7.0_272-b10
Multi-JDK versions /usr/lib/jvm/zulu-8-amd64:Azul Systems, Inc.-1.8.0_262-b19 /usr/lib/jvm/zulu-7-amd64:Azul Systems, Inc.-1.7.0_272-b10
Test Results https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/4/testReport/
Max. process+thread count 4237 (vs. ulimit of 10000)
modules C: hbase-server U: hbase-server
Console output https://ci-hadoop.apache.org/job/HBase/job/HBase-PreCommit-GitHub-PR/job/PR-2899/4/console
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@virajjasani virajjasani added the backport This PR is a back port of some issue or issues already committed to master label Jan 25, 2021
@virajjasani virajjasani merged commit cf337c4 into apache:branch-1 Jan 26, 2021
@mnpoonia mnpoonia deleted the normalizer_br_1 branch January 27, 2021 05:10
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