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MD5
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MD5
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72b08543210e0b77352e0a94ecb8530c *DESCRIPTION
fe61793a864de379cd80a15c055bad14 *NAMESPACE
b7f8876f976cbc9ec1adb08eaac3ff7d *R/Mode.R
06493e5be26da547ba2851240ff9493e *R/P2C2M-internal.R
abf61b4cb13c444d32141e8db4e5efd2 *R/calc.coal.R
1580ccfea6e56b857aab18f13bb17fd9 *R/calc.gsi.R
366e23800b0b70cb400ca4f5e93c9045 *R/calc.lcwt.R
47b19ed79c7b6f546561346486d2dfba *R/calc.ndc.R
5ef4a172268aa967862d889f81efd1e6 *R/calc.parse.R
fb07fa0fd331c097c226f7ca83a9a1ef *R/calchelpers.brprob.R
09afae3f935557fec52ddf54a4b8c39b *R/calchelpers.descend.R
28977685eccffbf071c13c6f2a36fc63 *R/calchelpers.dmvparse.R
1a5e91b13f0d482864d69ede49874826 *R/calchelpers.gtreeparse.R
df966bbf497492707692e8071f5792f3 *R/calchelpers.nodetips.R
2c1c97100da116ac3a9834e608ec5b09 *R/calchelpers.probcalc.R
94ef80df8acaa4dda9aab886ad6912ff *R/corehelpers.metrics.R
078fac0d27b6bf931d109cf707841ee5 *R/frmtMntse.R
3abde4611d388461c7c9e40f6ba9c1ec *R/is.character0.R
946caf6b0f04b5f0efc23b2ce96b88ad *R/is.integer0.R
a45d5fc57e3848def5823d741ce2754b *R/loghelpers.prntmngr.R
101e01998a341113629b9646297f9651 *R/ms.exec.R
41473d0a8c12c50d2c9101eb970de131 *R/p2c2m.analyze.R
453fce163a618e99ddd0fc7e3b7a93c2 *R/p2c2m2.complete.R
18afa286ffff389b1fd43c3da0bd0148 *R/p2c2m.readstarb.R
84f30e580b00cea96c9ecad712a36805 *R/readhelpers.extract_br_and_meta.R
c21de54f3502721a6c9cde084c8db3f3 *R/readhelpers.formatmeta.R
877242d943f42dfa35e68ac8452f6d4c *R/readhelpers.makeCFtable.R
698df074c3e36d14cfa91da596e70dcb *R/readhelpers.parsetrees.R
d419ae04d958446f7d4caf4ea098be4d *R/readtree.gtree.R
b045d756cc2f130c421e25b8520385bb *R/readtree.phybase.R
c3777a7fabb93a8e3660332adfe4ac2e *R/readtree.stree.R
0a37f44f38713df36623bccccf268443 *R/rmOutlrs.R
2ea17fef48d101a19f04315eae14ca3d *R/rmext.R
651734dc2fb652dc7c3854f36a3c7eab *R/rowMedians.R
2502d7546bd367a7926dc8d36df41f8c *R/rowModes.R
8c1c71b239ccd1a21fda2a2719ec27ea *R/rtnlc.R
658c2370cebd8e95cb1982bc84d2b48a *R/sourceDir.R
3b976fb560d56d62ff39818fec031bd9 *R/stats.acrGenes.R
c708ec0495293f83bfdfeb505c0a50ef *R/stats.coord.R
7c17eb2f837aeb30febbb54946388c1b *R/stats.main.R
a0911a581580de9d464529d5199f3b76 *R/stats.perGene.R
57ff13ca7a8f2bc727bcf533a42f9741 *R/statshelpers.cv.R
67fcf1c9c0e6962189f67c6d17b8a0f7 *R/statshelpers.diffrnce.R
a9c9b807fcb7731b68bf8a6b588b8cba *R/statshelpers.qntls.R
bc97e4a3512bae5c2cd89599a253df68 *R/statshelpers.sigsgn.R
c1a46f1855719a675d23ab37b93688c6 *R/str2lst.R
5268f3610bcab4626e5099ff6c49720a *build/vignette.rds
f9ba873e476ee9091f8e79262d37dc0d *data/sim.E.003.small.rda
55f0063ab7c09c493f19c60c693fb7e0 *data/viz_example_1.rda
6626fc2af2dcdf31a8f8ee709b7508ff *data/viz_example_2.rda
2a416e67b90ed9124ec671852451196d *exec/BEAST2phybase_1.7.py
640fcde4e97ef805c18e5f6e5a8612c0 *exec/BEAST2phybase_1.8.py
49aebd3830c66fd483e501896b59ee7f *exec/P2C2M.installPylibs.py
683a8352e76b1f80e34ff6096eb5c282 *exec/P2C2M.installRlibs.R
c51173d8d67fc3ad1dd6a1154a4d36e4 *exec/parseBEAUTiXML_1.7.py
ac06ab685828f7b092affacd1543755a *exec/parseBEAUTiXML_1.8.py
9aa3a73ce943b7aa11bc10b220cdb619 *inst/CITATION
b490748d9e0b04ba40bcdb700095c91a *inst/doc/P2C2M_CmdList.pdf
e890176321652fc3e458f861ee34131a *inst/doc/P2C2M_Vignette.R
97e4e1154d793299e7c928ac1e1cef2b *inst/doc/P2C2M_Vignette.Rnw
ee0cbc60b51b7cb596be8cc32ac5bbe4 *inst/doc/P2C2M_Vignette.pdf
cc2b1f52a8e2aebeb9b3de98bfa5c7fa *inst/extdata/sim.E.003.small/gene1.trees
2734f73a71ed18f0b2815694ae6a7b23 *inst/extdata/sim.E.003.small/gene10.trees
fc0f399fa1d789a5f251f8a51d6cb892 *inst/extdata/sim.E.003.small/gene2.trees
9cfd837cf053c959bd2b1f83b82a0f0f *inst/extdata/sim.E.003.small/gene3.trees
068b399d169252a7f99fe4be43ea95e0 *inst/extdata/sim.E.003.small/gene4.trees
b1faad8c3ee8739bcf0d3b5da34be735 *inst/extdata/sim.E.003.small/gene5.trees
64823fc0568ae639cd258e100bb8a67b *inst/extdata/sim.E.003.small/gene6.trees
1bf2f41022746817a9e57ed4292a6b40 *inst/extdata/sim.E.003.small/gene7.trees
04c38f072c8e4f34b3591e48530cb1b8 *inst/extdata/sim.E.003.small/gene8.trees
a5aa9b28935c741c27011362b1306f96 *inst/extdata/sim.E.003.small/gene9.trees
3437582e1551acda3fe5a147bd8155dd *inst/extdata/sim.E.003.small/sim.E.003.small.xml
fd423f566636dd013b9c9ce88704369f *inst/extdata/sim.E.003.small/species.trees
a449f7750fc5892b75b42101442fde8a *inst/msdir/corresp_about_license.pdf
43e2eaef2fe96bbe5a5f718915937d61 *inst/msdir/dist3.c
2c428d2dc3475132b1208be8b1e60099 *inst/msdir/microsat.c
1e5e318c1bfea98cc5aa70a1f16d4174 *inst/msdir/ms.c
666a5daaaac96585415bc7c279a550b8 *inst/msdir/ms.h
982da85047195f199c026847d89799ca *inst/msdir/rand1.c
a96d24acf5a0e6a976935b84d952f75b *inst/msdir/rand1t.c
11948708fb272ef7bf4b21210badfba7 *inst/msdir/rand2.c
5f48debe2765e980ea8bdfec1cb38962 *inst/msdir/rand2t.c
917bfcc558e1777a1097191cc085f0e7 *inst/msdir/sample_stats.c
8ba6c2431e2841c5a5217b60f7560d3c *inst/msdir/stats.c
a1690598555418e18c9ba26e359f2c38 *inst/msdir/streec.c
077a77b8d99521a99502471d5737a11f *inst/msdir/tajd.c
128d23d96a9e81ca86eb5aa10422b628 *man/P2C2M-package.Rd
9a406421039be38286c7fe8c5e04a7fd *man/p2c2m.complete.Rd
b3c3609afd839a857ce31f635c30f3c8 *man/sim.E.003.small.Rd
016a7e7c5ce42fc06af659369aa39f4a *man/viz_example.1.Rd
f6d4ac8ddbd3c957fc8998f57bcf66ae *man/viz_example.2.Rd
97e4e1154d793299e7c928ac1e1cef2b *vignettes/P2C2M_Vignette.Rnw
8cc8cc08e5482902dee31d1318aef546 *vignettes/P2C2M_Vignette.bib