Core dump in ema count

[DRL]

Hi,

installed ema via conda on an ubuntu server ...

$ cat test.ilv.fq | \ 
    ema count - \
    -w ../3_whitelist_barcodes/4M-with-alts-february-2016.txt \
    -o counts_file
Illegal instruction (core dumped)

Is this because of the fastq file? Or am running it the wrong way?

$ head -8 test.ilv.fq
@D00562:316:HKTGFBCX2:1:1105:1064:2069 1:N:0:AAGCGCTG
AGATGGGTCTGGGACCGCATGAGCTGTGGTAAACTAAGCGCGGCGTTGAGTTTCGTCACTGAACTTGCATGCTTGCGTGTATCATTGCGTGCTTCGAAACTTAACGTCGCGNTTAGTTTACCACAGCTAATAAGTGAAAATAAGTTAANT
+
DADDDHGIIIIIIFHIHIIIIGHHIIIIHIIICHHHCHIIIIHIIHHHGHHHIHHIDHHIHGIHGHHGIGIIIIIGDEHHIIIIIIIIGIHGHHHIIIIIIHEHIIIIIII#<<EHHHIHIIHHIIIIIIIIIIIIHIIHHHHIHEHH#<
@D00562:316:HKTGFBCX2:1:1105:1064:2069 2:N:0:AAGCGCTG
AAAGTATTCACAGTGTGAATACTTTATTGGGTTTAGGTGGAAAGTTACCCTCGGCCCCCCAGGGACCTGCCCTGACCAATTTCCTTGTTGGAAGTTAATTTTAATTGTAAACTAATTATATCGGCATTAGATATTCTTATTGCTTTTACA
+
@@D@DHIIHIIIIIGHHHHIIIIIIHHHIIIHIIIIIIIIIIIIHHIHHHHIIHHIIIIHIIIIIIHIHHIHIHHIIIIIIIIHHIIHHHIHHHHHIIIII<FHIIIIIIIIHHIIIIIIIIIHIIIIIIIIIIIIIHIIIHIIIIIIII

cheers,

dom

[arshajii]

Hi,
Can you try building from source? This might be an issue with the pre-built conda version. Also, are you on a 32-bit system by chance?