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Réalisation d’un système d’intégration de données biomédicales

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artonge/Tamalou

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Install

go get github.com/artonge/Tamalou

Dependencies

Data Sources

Sickness

  • OrphaData, couchDB : http://couchdb.telecomnancy.univ-lorraine.fr/orphadatabase
  • OMIM, csv : omim_onto.csv

Synonymes

  • HPO, SQLite : hpo_annotations.sqlite

After effect

  • Sider, mySQL : gmd-read:esial@neptune.telecomnancy.univ-lorraine.fr/gmd

Use

symptoms --> [Tamalou]

[Tamalou] --> {

  sicknesses [
    { name [drugs] }
    ...
  ]

  drugs [
    { name [drugs] }
    ...
  ]
}

On request

  • Get synonymes with HPO
  • Query OrphaData and OMIM for sickness
  • Query Sider for after effects
  • Map the fetched datas
  • Return results

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