Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

output figures in a snakemake report #7

Open
aryarm opened this issue Jan 5, 2020 · 0 comments
Open

output figures in a snakemake report #7

aryarm opened this issue Jan 5, 2020 · 0 comments
Labels
enhancement New feature or request low-priority

Comments

@aryarm
Copy link
Owner

aryarm commented Jan 5, 2020

The classify pipeline creates several figures as part of its output. Snakemake has a report() function for marking these figures as such. Consider using it.

That way, the user could have the option of whether to generate the plots (rather than making them required outputs at the end of the classify pipeline). And, we could keep them in a nice, tidy HTML file for them to peruse whenever they're trying to test a trained model.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request low-priority
Projects
None yet
Development

No branches or pull requests

1 participant