Not work

[shenweima]

Hi, I find a your blast tool from here. But I don't know why it is not work for me.
I also add my local database to db file, but they were not found in web page.
Could you help me?

[AshokHub]

I found that you are using Linux OS. You must provide access permission to the locBLAST folder using sudo chmod -R 777 locBLAST command before testing the tool.

[shenweima]

I think I have gave these files access permission

Like first time, there is still no response when I click "search" button.

[AshokHub]

I run the program on Microsoft Windows 10 operating system with PHP Version 7.3.5 in web server. It works fine. The only possible chances is with the PHP version, shown in the snapshot.

If you are using lower PHP version, replace the conditional statement with following lines (for Linux) in index.php file:

$osextn = "";
$osstrt = "./";

Working Demo GIF and WMV

OR

I hope this will solve your problem.

[shenweima]

Thanks for your answer. Yes, my server is centos 7. I have updated php version and restart apache server. But, it still not work.
If you know docker , you can make a docker image. It's good for people who wants to use this web blast.

Thank you again!

[AshokHub]

Did you tried the code changes below?

$osextn = "";
$osstrt = "./";

[AshokHub]

I am not familiar with Docker.
If still problem exists, give few days time to run through Linux through VMware and i'll conclude.

[shenweima]

$osextn = "";
$osstrt = "./";

The code is not changed because it is same with code in index.php

[mav-cii]

Hi, Ashok Kumar T.
Thank you very much for sharing your knowledge. I have the same problem that does not work the search used the demo, I am in ubuntu 16.04.
regards

[AshokHub]

I have tested in Linux server. It works.
Just do the following changes in index.php file, for Linux OS. Lines to replace: 246 to 260

to

[mav-cii]

Thanks for answering AshokHub, I will prove it

[AshokHub]

Best Wishes. I'll soon find a solution for OS compatibility issues.

[mav-cii]

I'm sorry, I still have problems. I get this error Invalid Input / Program / Database Selection!
Select the DEMO option and search button

[AshokHub]

Do changes as mentioned before. I have not updated in GitHub repository. You must do changes in your index.php file.

Demo: http://118.25.192.119/locBLAST/index.php
Source Code: http://www.biogem.org/downloads/github/index.txt

[shenweima]

Thanks, it works. I want to use my local db. But, I am failed.
This is my local db (six_plant).

And I changed the code in the index.php for using my local db.

But, I can't find that in web page.

Do changes as mentioned before. I have not updated in GitHub repository. You must do changes in your index.php file.

Demo: http://118.25.192.119/locBLAST/index.php
Source Code: http://www.biogem.org/downloads/github/index.txt

[shenweima]

I think I have known how to change code in index.php and footer.php.
However, I think this is not very simple.
Maybe you can refer viroblast which give a viroblast.ini file. viroblast

My boss very like the graphical overview.

It's better to add history result.

Also you can add get sequence function like ncbi blast. Or, develop a page which can get sequence using blastdbcmd commond.

I think your locblast will be better than viroblast in some days.

Thanks

[AshokHub]

@shenweima Thank you for you valuable feedback. I have planned to release new version locBLAST v3.0 with rich features mimic to NCBI BLAST. My aim is to design user-friendly interface with no manual configuration. For the time being, i'll do changes for your custom db through FTP.

[AshifSA]

i have the same problem with php server@AshokHub kindly help me