Ruunung dupfinder using illumina and nanopore data together

[UpalabdhaD]

Dear author,
Thanks for this pipeline! I am using this pipeline with a mammalian species. I would like to launch the workflow using illumina and nanopore data together. Is it valid to use -sr and -lr flags in a same command ??

[assane-mbodj]

Hi @UpalabdhaD ,
Thanks you to use dupfinder. It's not possible to run illumina and nanopore data together. You need to specify the the data type using --sr or --lr parameters for each data.