key_seq is not supported in spec_type_to_ds_vars() unless it is in an external sheet

[kodesiba]

When using spec_type_to_ds_vars() with the key_seq variable in the main sheet it will not get passed through to create_table and will not get added on later. It looks as though only the cols argument is passed to create_table() therefore the key_seq variable will not get passed through and added on.

[kodesiba]

core also looks to be getting lost in the mix as well

[kodesiba]

library(tibble)
#> Warning: package 'tibble' was built under R version 4.0.5
library(metacore)

metadoc <- list("variables" = tribble(
   ~"dataset", ~"variable", ~"order", ~"keep", ~"key_seq", ~"core",
   "DM",       "STUDYID",   1,        "Yes",    1,         "Required",
   "DM",       "DOMAIN",    1,        "Yes",    NA,        "Required",
   "DM",       "USUBJID",   1,        "Yes",    2,         "Required",
))

metadoc$variables
#> # A tibble: 3 × 6
#>   dataset variable order keep  key_seq core    
#>   <chr>   <chr>    <dbl> <chr>   <dbl> <chr>   
#> 1 DM      STUDYID      1 Yes         1 Required
#> 2 DM      DOMAIN       1 Yes        NA Required
#> 3 DM      USUBJID      1 Yes         2 Required

ds_vars <- spec_type_to_ds_vars(metadoc,
                                key_seq_sep_sheet = FALSE,
                                sheet = "variables")

ds_vars
#> # A tibble: 3 × 6
#>   dataset variable order keep  key_seq core 
#>   <chr>   <chr>    <dbl> <lgl>   <int> <chr>
#> 1 DM      STUDYID      1 TRUE       NA <NA> 
#> 2 DM      DOMAIN       1 TRUE       NA <NA> 
#> 3 DM      USUBJID      1 TRUE       NA <NA>

[statasaurus]

All you need to do is move your key_seq in the cols argument