v0.6.4 to Dev

.github/PULL_REQUEST_TEMPLATE.md

@@ -3,12 +3,16 @@
 Thanks so much :) First, please take a moment to carefully check through
 the below items:
 
-- [ ] Changes have gone through actual use testing
+#### Sanity
+
+- [ ] I'm aware of the implications of the proposed changes
 - [ ] [Docs](https://autonomio.github.io/talos) are updated where relevant
 - [ ] Code is [PEP8](https://www.python.org/dev/peps/pep-0008/)
+
+#### Tests
+
+- [ ] Changes have gone through actual use testing
 - [ ] All local tests have passed (run ./test.sh in /talos)
-- [ ] Travis tests have passed
-- [ ] Open a pull request
-- [ ] PR is to daily-dev branch
+- [ ] Tests have been updated to reflect the changes
 
 <hr>

docs/Analyze.md

@@ -54,7 +54,7 @@ See docstrings for each function for a more detailed description.
 
 **`plot_bars`** A bar chart that allows up to 4 axis of data to be shown at once
 
-**`plot_bars`** Kernel Destiny Estimation type histogram with support for 1 or 2 axis of data
+**`plot_kde`** Kernel Destiny Estimation type histogram with support for 1 or 2 axis of data
 
 **`table`** A sortable dataframe with a given metric and hyperparameters
 

setup.py

@@ -16,7 +16,7 @@
 URL = 'http://autonom.io'
 LICENSE = 'MIT'
 DOWNLOAD_URL = 'https://github.com/autonomio/talos/'
-VERSION = '0.6.3'
+VERSION = '0.6.4'
 
 try:
     from setuptools import setup

talos/__init__.py

@@ -34,4 +34,4 @@
 del commands, scan, model, metrics, key
 del sub, keep_from_templates, template_sub, warnings
 
-__version__ = "0.6.3"
+__version__ = "0.6.4"

talos/model/hidden_layers.py

@@ -1,80 +1,41 @@
-def hidden_layers(model, params, last_neuron):
+from keras.layers import Dense, Dropout
+from .network_shape import network_shape
+from ..utils.exceptions import TalosParamsError
+
 
+def hidden_layers(model, params, last_neuron):
     '''HIDDEN LAYER Generator
 
-    NOTE: 'first_neuron', 'dropout', and 'hidden_layers' need
+    NOTE: 'shapes', 'first_neuron', 'dropout', and 'hidden_layers' need
     to be present in the params dictionary.
 
     Hidden layer generation for the cases where number
     of layers is used as a variable in the optimization process.
     Handles things in a way where any number of layers can be tried
     with matching hyperparameters.'''
 
-    from keras.layers import Dense, Dropout
-    from .network_shape import network_shape
-    from ..utils.exceptions import TalosParamsError
-
-    try:
-        kernel_initializer = params['kernel_initializer']
-    except KeyError:
-        kernel_initializer = 'glorot_uniform'
-
-    try:
-        kernel_regularizer = params['kernel_regularizer']
-    except KeyError:
-        kernel_regularizer = None
-
-    try:
-        bias_initializer = params['bias_initializer']
-    except KeyError:
-        bias_initializer = 'zeros'
-
-    try:
-        bias_regularizer = params['bias_regularizer']
-    except KeyError:
-        bias_regularizer = None
-
-    try:
-        use_bias = params['use_bias']
-    except KeyError:
-        use_bias = True
-
-    try:
-        activity_regularizer = params['activity_regularizer']
-    except KeyError:
-        activity_regularizer = None
-
-    try:
-        kernel_constraint = params['kernel_constraint']
-    except KeyError:
-        kernel_constraint = None
-
-    try:
-        bias_constraint = params['bias_constraint']
-    except KeyError:
-        bias_constraint = None
-
     # check for the params that are required for hidden_layers
-    for param in ['shapes', 'first_neuron', 'dropout']:
-        try:
-            params[param]
-        except KeyError as err:
-            if err.args[0] == param:
-                raise TalosParamsError("hidden_layers requires '" + param + "' in params")
+    for param in ['shapes', 'first_neuron', 'dropout', 'hidden_layers']:
+        if param not in params:
+            raise TalosParamsError(
+                "hidden_layers requires '" + param + "' in params")
 
     layer_neurons = network_shape(params, last_neuron)
 
     for i in range(params['hidden_layers']):
-
-        model.add(Dense(layer_neurons[i],
-                        activation=params['activation'],
-                        use_bias=use_bias,
-                        kernel_initializer=kernel_initializer,
-                        kernel_regularizer=kernel_regularizer,
-                        bias_initializer=bias_initializer,
-                        bias_regularizer=bias_regularizer,
-                        activity_regularizer=activity_regularizer,
-                        kernel_constraint=kernel_constraint,
-                        bias_constraint=bias_constraint))
-
+        model.add(Dense(
+            layer_neurons[i],
+            kernel_initializer=params.get(
+                'kernel_initializer',
+                'glorot_uniform'
+            ),
+            kernel_regularizer=params.get('kernel_regularizer'),
+            bias_initializer=params.get('bias_initializer', 'zeros'),
+            bias_regularizer=params.get('bias_regularizer'),
+            use_bias=params.get('use_bias', True),
+            activity_regularizer=params.get('activity_regularizer'),
+            kernel_constraint=params.get('kernel_constraint'),
+            bias_constraint=params.get('bias_constraint'),
+            activation=params.get('activation')
+        ))
         model.add(Dropout(params['dropout']))

talos/model/normalizers.py

@@ -1,7 +1,3 @@
-from keras.optimizers import SGD, Adam, Adadelta, Adagrad, Adamax, RMSprop
-from keras.optimizers import Nadam
-
-
 def lr_normalizer(lr, optimizer):
     """Assuming a default learning rate 1, rescales the learning rate
     such that learning rates amongst different optimizers are more or less
@@ -15,6 +11,10 @@ def lr_normalizer(lr, optimizer):
         The optimizer. For example, Adagrad, Adam, RMSprop.
     """
 
+    from keras.optimizers import SGD, Adam, Adadelta, Adagrad, Adamax, RMSprop
+    from keras.optimizers import Nadam
+    from talos.utils.exceptions import TalosModelError
+
     if optimizer == Adadelta:
         pass
     elif optimizer == SGD or optimizer == Adagrad:
@@ -23,5 +23,7 @@ def lr_normalizer(lr, optimizer):
         lr /= 1000.0
     elif optimizer == Adamax or optimizer == Nadam:
         lr /= 500.0
+    else:
+        raise TalosModelError(str(optimizer) + " is not supported by lr_normalizer")
 
     return lr

test/commands/__init__.py

@@ -5,3 +5,4 @@
 from .test_analyze import test_analyze
 from .test_random_methods import test_random_methods
 from .test_rest import test_rest
+from .test_lr_normalizer import test_lr_normalizer

test/commands/test_lr_normalizer.py

@@ -0,0 +1,20 @@
+def test_lr_normalizer():
+    '''Test learning rate normalizer to confirm an invalid type is
+    recognized and throws TalosModelError.'''
+
+    from talos.model.normalizers import lr_normalizer
+    from talos.utils.exceptions import TalosModelError
+
+    print('Testing lr_normalizer() and invalid optimizer type...')
+
+    # Using string as proxy for any invalid class
+    # (ex., tensorflow-sourced optimizer)
+    bad_optimizer = 'test'
+
+    try:
+        lr_normalizer(1, bad_optimizer)
+    except TalosModelError:
+        print('Invalid model optimizer caught successfully!')
+        pass
+    else:
+        print('Invalid (string) model optimizer type not caught.')

test_script.py

@@ -11,6 +11,7 @@
     scan_object = test_scan()
     test_analyze(scan_object)
     test_random_methods()
+    test_lr_normalizer()
     test_rest(scan_object)
 
     print("\n All tests successfully completed :) Good work. \n ")