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Feed in fasta files? #6

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tthye1 opened this issue Jun 16, 2021 · 2 comments
Closed

Feed in fasta files? #6

tthye1 opened this issue Jun 16, 2021 · 2 comments

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@tthye1
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tthye1 commented Jun 16, 2021

Hello,

we have Dengue sequences (POLY gene) analysed by Sanger sequencing. Is it possible to feed in these fasta files into your pipeline, omitting the NGS part of the analysis?

Best wishes,

Thorsten
@cimendes
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Hello!

Currently, LMAS only accepts short-read sequencing data, either paired-end or single-end. At the moment we've no plans to allow complete FASTA DENV sequences to be passed for serotyping and genotyping, and multiple-sequence alignment as the NGS analysis component is an essential part to obtain accurate, reproducible and high-quality DENV sequences.

Thank you for your interest in LMAS!

@cimendes
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Closing due to lack of activity! If you have further questions please feel free to re-open this issue.

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@cimendes @tthye1