Remove API docs for rtd build

bacpop · Dec 18, 2020 · 37ee044 · 37ee044
1 parent 7414af7
commit 37ee044
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Showing 5 changed files with 1 addition and 111 deletions.
diff --git a/docs/api.rst b/docs/api.rst
diff --git a/docs/conf.py b/docs/conf.py
@@ -31,22 +31,9 @@
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
-extensions = ['sphinx.ext.autodoc',
-    'sphinx.ext.mathjax',
+extensions = ['sphinx.ext.mathjax',
     'sphinx.ext.viewcode']
 
-# Causes a problem with rtd: https://github.com/pypa/setuptools/issues/1694
-autodoc_mock_imports = ["hdbscan",
-                        "numpy",
-                        "graph-tool",
-                        "pandas",
-                        "scipy",
-                        "sklearn",
-                        "matplotlib",
-                        "dendropy",
-                        "pp-sketchlib",
-                        "h5py"]
-
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
 

diff --git a/docs/index.rst b/docs/index.rst
@@ -27,7 +27,6 @@ Where ``references.txt`` is a list of assembly fasta files, one per line. See
    tutorial.rst
    troubleshooting.rst
    scripts.rst
-   api.rst
    miscellaneous.rst
 
 Details

diff --git a/docs/setup.py b/docs/setup.py
@@ -65,12 +65,5 @@ def find_version(*file_paths):
              'scripts/poppunk_calculate_silhouette.py',
              'scripts/poppunk_extract_distances.py',
              'scripts/poppunk_pickle_fix.py'],
-    install_requires=['numpy',
-                      'scipy',
-                      'scikit-learn',
-                      'DendroPy',
-                      'pandas',
-                      'matplotlib',
-                      'hdbscan'],
     test_suite="test",
 )
diff --git a/setup.py b/setup.py
@@ -65,12 +65,5 @@ def find_version(*file_paths):
              'scripts/poppunk_calculate_silhouette.py',
              'scripts/poppunk_extract_distances.py',
              'scripts/poppunk_pickle_fix.py'],
-    install_requires=['numpy',
-                      'scipy',
-                      'scikit-learn',
-                      'DendroPy',
-                      'pandas',
-                      'matplotlib',
-                      'hdbscan'],
     test_suite="test",
 )