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@bacpop

Bacterial population genetics

Pathogen Informatics and Modelling @ EMBL-EBI / Bacterial Evolutionary Epidemiology Group @ Imperial College London

Pinned

  1. PopPUNK Public

    PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

    Python 56 15

  2. Library of sketching functions used by PopPUNK

    C++ 25 5

  3. mandrake Public

    Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

    Python 27 2

  4. PopPIPE Public

    Population analysis PIPEline 🛠🧬

    Python 9 2

  5. Methods to determine sequence element (unitig) presence/absence

    Python 5 1

  6. AMR prediction from S. pneumoniae assemblies in the browser

    JavaScript

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