Attempt to fix readthedocs builds (#132)

* Remove all requirements from setup.py * Remove dependencies from docs setup
bacpop · Dec 4, 2020 · d824433 · d824433
1 parent fcf6f2d
commit d824433
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Showing 3 changed files with 1 addition and 16 deletions.
diff --git a/docs/setup.py b/docs/setup.py
@@ -65,12 +65,5 @@ def find_version(*file_paths):
              'scripts/poppunk_calculate_silhouette.py',
              'scripts/poppunk_extract_distances.py',
              'scripts/poppunk_pickle_fix.py'],
-    install_requires=['numpy',
-                      'scipy',
-                      'scikit-learn',
-                      'DendroPy',
-                      'pandas',
-                      'matplotlib',
-                      'hdbscan'],
     test_suite="test",
 )
diff --git a/environment.yml b/environment.yml
@@ -7,7 +7,6 @@ channels:
 dependencies:
   - pip
   - numpy
-  - mkl
   - scipy
   - python-dateutil
   - pandas
@@ -21,6 +20,6 @@ dependencies:
   - pp-sketchlib >=1.5.1
   - graph-tool
   - requests
-  - flask 
+  - flask
   - flask-cors
   - networkx
diff --git a/setup.py b/setup.py
@@ -69,12 +69,5 @@ def find_version(*file_paths):
              'scripts/poppunk_add_weights.py',
              'scripts/poppunk_easy_run.py',
              'scripts/poppunk_pickle_fix.py'],
-    install_requires=['numpy',
-                      'scipy',
-                      'scikit-learn',
-                      'DendroPy',
-                      'pandas',
-                      'matplotlib',
-                      'hdbscan'],
     test_suite="test",
 )