fix conda envs for ngmaster and mykrobe

bactopia · Nov 27, 2022 · fd12050 · fd12050
1 parent cf3c85f
commit fd12050
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/modules/nf-core/mykrobe/predict/main.nf b/modules/nf-core/mykrobe/predict/main.nf
@@ -3,7 +3,7 @@ include { get_resources; initOptions; saveFiles } from '../../../../lib/nf/funct
 RESOURCES   = get_resources(workflow.profile, params.max_memory, params.max_cpus)
 options     = initOptions(params.options ? params.options : [:], 'mykrobe')
 publish_dir = params.is_subworkflow ? "${params.outdir}/bactopia-tools/${params.wf}/${params.run_name}" : params.outdir
-conda_tools = "bioconda::mykrobe=0.12.0"
+conda_tools = "bioconda::mykrobe=0.12.1"
 conda_name  = conda_tools.replace("=", "-").replace(":", "-").replace(" ", "-")
 conda_env   = file("${params.condadir}/${conda_name}").exists() ? "${params.condadir}/${conda_name}" : conda_tools
 

diff --git a/modules/nf-core/ngmaster/main.nf b/modules/nf-core/ngmaster/main.nf
@@ -3,7 +3,7 @@ include { get_resources; initOptions; saveFiles } from '../../../lib/nf/function
 RESOURCES   = get_resources(workflow.profile, params.max_memory, params.max_cpus)
 options     = initOptions(params.options ? params.options : [:], 'ngmaster')
 publish_dir = params.is_subworkflow ? "${params.outdir}/bactopia-tools/${params.wf}/${params.run_name}" : params.outdir
-conda_tools = "bioconda::ngmaster=0.5.8"
+conda_tools = "bioconda::ngmaster=0.5.8 conda-forge::python=3.9"
 conda_name  = conda_tools.replace("=", "-").replace(":", "-").replace(" ", "-")
 conda_env   = file("${params.condadir}/${conda_name}").exists() ? "${params.condadir}/${conda_name}" : conda_tools