Platform for Oncogenomic Reporting and Interpretation (PORI)

The Platform for Oncogenomic Reporting and Interpretation (PORI) is an open source collection of software designed to support scaleable precision oncology. The platform has two main components: a graph knowledge base (GraphKB) and an integrated pipeline reporting application (IPR).

For more information see the related user manual

Demo

A live demo of this is found at: pori-demo.bcgsc.ca. This demo was deployed via docker-compose

Citation

Please cite Reisle, C. et al. A platform for oncogenomic reporting and interpretation. Nat. Commun. 13, 1–11 (2022)

Building the Docs (Developers)

The main PORI site is built from this repo and pull documentation files from the python adapter repos. The documentation is built using mkdocs. The main website will be updated on merge to the master branch of this repository.

First, set up a virtual environment (Optional but recommended)

python3 -m venv venv
source venv/bin/activate
pip install -U setuptools pip

Install the python dependencies

pip install -r requirements.txt

Run the script to pull the other respository files

bash docs/build_external.sh

And finally serve the documentation for viewing locally with

mkdocs serve