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Greengenes2 database not through qiime2 #1829

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lcamVz opened this issue Oct 10, 2023 · 2 comments
Closed

Greengenes2 database not through qiime2 #1829

lcamVz opened this issue Oct 10, 2023 · 2 comments
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@lcamVz
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lcamVz commented Oct 10, 2023

I wanted to ask if there is a plan of converting the new gg2 database to dada2 R taxonomy format?
@benjjneb
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Yes. You can use code here to do it: #1680

I will cut an official dada2 format in the next month-ish to host on Zenodo like our other officially suported references.

@d4straub d4straub mentioned this issue Nov 10, 2023
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@benjjneb
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Closed as redundant with #1680

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@benjjneb @lcamVz