Not an issue, a general discussion.

[karthickbrlab]

HI,
I have generated individual gene trees for 10 genes among 12 species using ParGenes.
Now how can i use all these tree to infer single species tree using AleRax, which depicts the divergence among the species.

which parameter i should invoke?

Thank you.

[BenoitMorel]

Hello, If you have generated one tree per gene family, you don't necessarily need to use AleRax (which takes as input distributions of gene trees instead of individual maximum likelihood gene trees). I would rather use SpeciesRax or Astral-Pro if you have gene duplications/losses/transfers. Best, Benoit Le ven. 21 juin 2024 à 06:33, kbsivakumar ***@***.***> a écrit :

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HI, I have generated individual gene trees for 10 genes among 12 species using pargenes. Now how can i use all these tree to infer single species tree which depicts the divergence among the species.. which parameter i should invoke? Thank you. — Reply to this email directly, view it on GitHub <#7>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADJJ3ULWBRC3AMNHG6THHT3ZIOUKZAVCNFSM6AAAAABJVEXBCSVHI2DSMVQWIX3LMV43ASLTON2WKOZSGM3DKNRZGI3DENQ> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>