Snakemake Orchestrator API w/ Kubernetes

Miro board of design:

https://miro.com/app/board/uXjVKLKSUGQ=/

Setup

This project uses Pixi to manage packages and the environment.

# linux / mac os
curl -fsSL https://pixi.sh/install.sh | bash

To install the dependencies, run the following command:

pixi install

Setup

Ensure you have docker and docker-compose installed on your machine.

To make sure that theyre installed, the following commands should return the version of the installed software:

docker --version
# Docker version 20.10.22, build 3a2c30b

docker-compose --version
# Docker Compose version v2.15.1

Useful Resources

• Learning FastAPI: https://fastapi.tiangolo.com/tutorial/
• Learning Pydantic: https://pydantic-docs.helpmanual.io/
• Learning Docker: https://docs.docker.com/get-started/overview/
• Learning Pixi: https://pixi.sh

Status