Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

--subspace "multicomp" causes QC to fail #20

Open
johneusebio opened this issue Aug 17, 2018 · 0 comments
Open

--subspace "multicomp" causes QC to fail #20

johneusebio opened this issue Aug 17, 2018 · 0 comments

Comments

@johneusebio
Copy link

When the --subspace flag is set to "multicomp", then oppni appears to finish running, but QC fails. When I inspected the final optimized output, the SPMs seem to have 10 indices, instead of the expected 3 (con, fix, ind), which may be causing the problem.

The QC1 logfile has the following message:

--->>> reporting exception details ..

exc_report =

    'Assignment has more non-singleton rhs dimensions than non-singleton subscripts
     
     Error in Pipeline_QC1 (line 271)
             eigo(:,i)=zscore(IMAGE_set{i});
     
     Error in QC_wrapper (line 23)
         Pipeline_QC1( inputfile )
     
     Error in qc1_all_subjects (line 2)

This message was found in the QC2 log:

exc_report =

    'Subscripted assignment dimension mismatch.
     
     Error in Pipeline_QC2 (line 292)
             spm_set(:,:,ksub) = nifti_to_mat( VV,MM );
     
     Error in QC_wrapper (line 26)
         Pipeline_QC2( inputfile , newmaskname, Npcs)
     
     Error in qc2_all_subjects (line 2)
     try, QC_wrapper('2', '/global/home/hpc3586/SART_data/oppni_output/GO/Combined/processing_GO_sart_combined_replicate_erCVA/input_file.txt', 'None', '4'); catch ME, exc_report = getReport(ME); display('--->>> reporting exception details ..'); display(exc_report); display(' <<--- Done.'); exit(1); end; exit;'
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant