optimistic test fix attempt: load file within jar

bigdatagenomics · Nov 4, 2014 · 6370b6c · 6370b6c
1 parent e560f30
commit 6370b6c
Showing 1 changed file with 9 additions and 2 deletions.
diff --git a/adam-cli/src/test/scala/org/bdgenomics/adam/cli/ViewSuite.scala b/adam-cli/src/test/scala/org/bdgenomics/adam/cli/ViewSuite.scala
@@ -17,7 +17,7 @@
  */
 package org.bdgenomics.adam.cli
 
-import java.io.File
+import java.io.{ FileNotFoundException, File }
 
 import org.apache.commons.io.FileUtils
 import org.apache.hadoop.mapreduce.Job
@@ -26,7 +26,14 @@ import org.bdgenomics.adam.rdd.ADAMContext._
 
 class ViewSuite extends SparkFunSuite {
 
-  val inputSamPath = ClassLoader.getSystemClassLoader.getResource("flag-values.sam").getFile
+  val loader = Thread.currentThread().getContextClassLoader
+  val inputSamPath =
+    try {
+      loader.getResource("flag-values.sam").getFile
+    } catch {
+      case e: FileNotFoundException =>
+        loader.getResource("src/test/resources/flag-values.sam").getFile
+    }
   val testDirectory = new File(inputSamPath).getParent
   val intermediateAdamPath = "%s/flag-values.adam".format(testDirectory)
   val unmappedAdamPath = "%s/flag-values-unmapped.adam".format(testDirectory)