[ADAM-1383] Use gt instead of gteq in FASTQ input format line size ch…

…ecks. Resolves #1383.
bigdatagenomics · Feb 21, 2017 · 8c8b944 · 8c8b944
1 parent 0e57357
commit 8c8b944
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/adam-core/src/main/java/org/bdgenomics/adam/io/InterleavedFastqInputFormat.java b/adam-core/src/main/java/org/bdgenomics/adam/io/InterleavedFastqInputFormat.java
@@ -71,7 +71,7 @@ private static class InterleavedFastqRecordReader extends FastqRecordReader {
          *   formatted pair of FASTQ records.
          */
         protected boolean checkBuffer(final int bufferLength, final Text buffer) {
-            return (bufferLength >= 2 &&
+            return (bufferLength > 2 &&
                     buffer.getBytes()[0] == '@' &&
                     buffer.getBytes()[bufferLength - 2] == '/' &&
                     buffer.getBytes()[bufferLength - 1] == '1');

diff --git a/adam-core/src/main/java/org/bdgenomics/adam/io/SingleFastqInputFormat.java b/adam-core/src/main/java/org/bdgenomics/adam/io/SingleFastqInputFormat.java
@@ -62,7 +62,7 @@ private static class SingleFastqRecordReader extends FastqRecordReader {
          *   formatted pair of FASTQ records.
          */
         protected boolean checkBuffer(final int bufferLength, final Text buffer) {
-            return (bufferLength >= 0 &&
+            return (bufferLength > 0 &&
                     buffer.getBytes()[0] == '@');
         }