updating build dependency versions to latest minor versions

bigdatagenomics · Oct 5, 2015 · e6ce184 · e6ce184
1 parent f39de57
commit e6ce184
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Showing 5 changed files with 15 additions and 15 deletions.
diff --git a/adam-core/src/test/resources/ordered.sam b/adam-core/src/test/resources/ordered.sam
@@ -1,4 +1,4 @@
-@HD	VN:1.4	SO:unsorted
+@HD	VN:1.5	SO:unsorted
 @SQ	SN:14	LN:107349540	M5:14
 @SQ	SN:GL000211.1	LN:166566	M5:GL000211.1
 @SQ	SN:GL000244.1	LN:39929	M5:GL000244.1

diff --git a/adam-core/src/test/resources/sorted.sam b/adam-core/src/test/resources/sorted.sam
@@ -1,4 +1,4 @@
-@HD	VN:1.4	SO:unsorted
+@HD	VN:1.5	SO:unsorted
 @SQ	SN:1	LN:1000
 @SQ	SN:3	LN:1000
 @SQ	SN:4	LN:2000

diff --git a/adam-core/src/test/resources/unordered.sam b/adam-core/src/test/resources/unordered.sam
@@ -1,4 +1,4 @@
-@HD	VN:1.4	SO:unsorted
+@HD	VN:1.5	SO:unsorted
 @SQ	SN:GL000211.1	LN:166566	M5:GL000211.1
 @SQ	SN:GL000244.1	LN:39929	M5:GL000244.1
 @SQ	SN:chr22	LN:51304566	M5:CHR22

diff --git a/adam-core/src/test/resources/unsorted.sam b/adam-core/src/test/resources/unsorted.sam
@@ -1,4 +1,4 @@
-@HD	VN:1.4	SO:unsorted
+@HD	VN:1.5	SO:unsorted
 @SQ	SN:1	LN:1000
 @SQ	SN:chr2	LN:1000
 @SQ	SN:3	LN:1000

diff --git a/pom.xml b/pom.xml
@@ -18,14 +18,14 @@
 
   <properties>
     <java.version>1.7</java.version>
-    <avro.version>1.7.6</avro.version>
+    <avro.version>1.7.7</avro.version>
     <spark.version>1.4.1</spark.version>
     <parquet.version>1.8.1</parquet.version>
     <!-- Edit the following line to configure the Hadoop (HDFS) version. -->
     <hadoop.version>2.2.0</hadoop.version>
     <scoverage.version>0.99.2</scoverage.version>
     <utils.version>0.2.3</utils.version>
-    <htsjdk.version>1.133</htsjdk.version>
+    <htsjdk.version>1.139</htsjdk.version>
   </properties>
 
   <modules>
@@ -299,7 +299,7 @@
       <dependency>
         <groupId>com.esotericsoftware.kryo</groupId>
         <artifactId>kryo</artifactId>
-        <version>2.21</version>
+        <version>2.24.0</version>
       </dependency>
       <dependency>
         <groupId>org.scoverage</groupId>
@@ -319,7 +319,7 @@
       <dependency>
         <groupId>it.unimi.dsi</groupId>
         <artifactId>fastutil</artifactId>
-        <version>6.4.4</version>
+        <version>6.6.5</version>
       </dependency>
       <dependency>
         <groupId>org.scala-lang</groupId>
@@ -456,7 +456,7 @@
       <dependency>
         <groupId>org.seqdoop</groupId>
         <artifactId>hadoop-bam</artifactId>
-        <version>7.0.0</version>
+        <version>7.1.0</version>
         <exclusions>
           <exclusion>
             <groupId>org.seqdoop</groupId>
@@ -472,7 +472,7 @@
       <dependency>
         <groupId>args4j</groupId>
         <artifactId>args4j</artifactId>
-        <version>2.0.23</version>
+        <version>2.0.31</version>
       </dependency>
       <dependency>
         <groupId>org.scalatest</groupId>
@@ -483,17 +483,17 @@
       <dependency>
         <groupId>org.slf4j</groupId>
         <artifactId>slf4j-log4j12</artifactId>
-        <version>1.7.5</version>
+        <version>1.7.12</version>
       </dependency>
       <dependency>
         <groupId>org.apache.httpcomponents</groupId>
         <artifactId>httpclient</artifactId>
-        <version>4.3.2</version>
+        <version>4.5.1</version>
       </dependency>
       <dependency>
         <groupId>com.netflix.servo</groupId>
         <artifactId>servo-core</artifactId>
-        <version>0.5.5</version>
+        <version>0.11.5</version>
         <exclusions>
           <exclusion>
             <groupId>com.google.guava</groupId>
@@ -504,12 +504,12 @@
       <dependency>
         <groupId>com.google.guava</groupId>
         <artifactId>guava</artifactId>
-        <version>14.0.1</version>
+        <version>18.0</version>
       </dependency>
       <dependency>
         <groupId>org.mockito</groupId>
         <artifactId>mockito-core</artifactId>
-        <version>1.9.5</version>
+        <version>1.10.19</version>
         <scope>test</scope>
       </dependency>
     </dependencies>