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BroadcastRegionJoin has serialization failures #1334

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fnothaft opened this issue Jan 1, 2017 · 1 comment
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BroadcastRegionJoin has serialization failures #1334

fnothaft opened this issue Jan 1, 2017 · 1 comment
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@fnothaft
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@fnothaft fnothaft commented Jan 1, 2017

Two issues:

  • Unless your left side is a VariantContextRDD, the wrong IntervalTreeSerializer gets picked due to type erasure (last one wins, apparently)
  • Serializing a VariantContext with a FieldSerializer fails
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@fnothaft fnothaft commented Jan 3, 2017

Cross linking to bigdatagenomics/utils#97.

fnothaft added a commit to fnothaft/adam that referenced this issue Jan 3, 2017
Resolves bigdatagenomics#1334. Eliminates type erasure problems by having different concrete
implementations per each broadcast. Depends on
bigdatagenomics/utils#97.
@heuermh heuermh modified the milestone: 0.21.0 Jan 4, 2017
fnothaft added a commit to fnothaft/adam that referenced this issue Jan 5, 2017
Resolves bigdatagenomics#1334. Eliminates type erasure problems by having different concrete
implementations per each broadcast. Depends on
bigdatagenomics/utils#97.
fnothaft added a commit to fnothaft/adam that referenced this issue Jan 5, 2017
Resolves bigdatagenomics#1334. Eliminates type erasure problems by having different concrete
implementations per each broadcast. Depends on
bigdatagenomics/utils#97.
fnothaft added a commit to fnothaft/adam that referenced this issue Jan 6, 2017
Resolves bigdatagenomics#1334. Eliminates type erasure problems by having different concrete
implementations per each broadcast. Depends on
bigdatagenomics/utils#97.
@heuermh heuermh closed this in #1336 Jan 6, 2017
heuermh added a commit that referenced this issue Jan 6, 2017
Resolves #1334. Eliminates type erasure problems by having different concrete
implementations per each broadcast. Depends on
bigdatagenomics/utils#97.
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