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--tab5 Each read or pair is on a single line. An unpaired read line is [name]\t[seq]\t[qual]\n. A paired-end read line is [name]\t[seq1]\t[qual1]\t[seq2]\t[qual2]\n. An input file can be a mix of unpaired and paired-end reads and Bowtie 2 recognizes each according to the number of fields, handling each as it should.
--tab6 is similar except, for paired-end reads, the second end can have a different name from the first: [name1]\t[seq1]\t[qual1]\t[name2]\t[seq2]\t[qual2]\n.
The text was updated successfully, but these errors were encountered:
From BenLangmead/bowtie2#75:
--tab5
Each read or pair is on a single line. An unpaired read line is[name]\t[seq]\t[qual]\n
. A paired-end read line is[name]\t[seq1]\t[qual1]\t[seq2]\t[qual2]\n
. An input file can be a mix of unpaired and paired-end reads and Bowtie 2 recognizes each according to the number of fields, handling each as it should.--tab6
is similar except, for paired-end reads, the second end can have a different name from the first:[name1]\t[seq1]\t[qual1]\t[name2]\t[seq2]\t[qual2]\n
.The text was updated successfully, but these errors were encountered: