[ADAM-1424] Adding test for reads dropped in 0.21.0. #1448
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Test FAILed. Build result: FAILURE[...truncated 16 lines...] > /home/jenkins/git2/bin/git rev-parse origin/pr/1448/merge^{commit} # timeout=10 > /home/jenkins/git2/bin/git branch -a --contains bfcb1ef # timeout=10 > /home/jenkins/git2/bin/git rev-parse remotes/origin/pr/1448/merge^{commit} # timeout=10Checking out Revision bfcb1ef (origin/pr/1448/merge) > /home/jenkins/git2/bin/git config core.sparsecheckout # timeout=10 > /home/jenkins/git2/bin/git checkout -f bfcb1eff43e621d34ccbeef519dfbf8399756238First time build. Skipping changelog.Triggering ADAM-prb ? 2.3.0,2.11,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.3.0,2.11,2.0.0,centosTriggering ADAM-prb ? 2.3.0,2.10,2.0.0,centosTriggering ADAM-prb ? 2.6.0,2.11,2.0.0,centosTriggering ADAM-prb ? 2.6.0,2.10,2.0.0,centosTriggering ADAM-prb ? 2.3.0,2.10,1.6.1,centosTriggering ADAM-prb ? 2.6.0,2.11,1.6.1,centosADAM-prb ? 2.3.0,2.11,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.11,2.0.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,2.0.0,centos completed with result FAILUREADAM-prb ? 2.6.0,2.11,2.0.0,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.10,2.0.0,centos completed with result SUCCESSADAM-prb ? 2.3.0,2.10,1.6.1,centos completed with result SUCCESSADAM-prb ? 2.6.0,2.11,1.6.1,centos completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
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Jenkins, retest this please. |
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Test PASSed. |
fnothaft
reviewed
Mar 22, 2017
| @@ -494,4 +494,15 @@ class ADAMContextSuite extends ADAMFunSuite { | |||
| case _ => fail("unexpected variant start " + v.getStart) | |||
| }) | |||
| } | |||
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| sparkTest("loadAlignments should not fail on single-end and paired-end fastq reads") { | |||
| val readsFilepath1 = testFile("proper_pairs_1.fq") | |||
There was a problem hiding this comment.
OOC, does this test fail on 0.21.0?
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Test PASSed. |
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Squashed to a single commit |
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Test PASSed. |
fnothaft
approved these changes
Mar 27, 2017
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Fixes #1424.
Adapted unit test contributed by @xubo245 to use existing test resources.